View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17676_low_34 (Length: 227)

Name: NF17676_low_34
Description: NF17676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17676_low_34
NF17676_low_34
[»] chr1 (24 HSPs)
chr1 (99-227)||(41706918-41707046)
chr1 (99-227)||(51306205-51306333)
chr1 (107-227)||(4564073-4564193)
chr1 (107-227)||(14284115-14284235)
chr1 (99-227)||(51304810-51304938)
chr1 (107-221)||(42813717-42813831)
chr1 (107-227)||(11342042-11342162)
chr1 (107-227)||(11500061-11500181)
chr1 (107-227)||(14282853-14282973)
chr1 (107-227)||(16421981-16422101)
chr1 (99-227)||(41729769-41729897)
chr1 (107-219)||(4562837-4562949)
chr1 (107-227)||(16420190-16420310)
chr1 (107-227)||(46319066-46319186)
chr1 (107-227)||(38482389-38482508)
chr1 (107-227)||(42813302-42813422)
chr1 (107-227)||(46318833-46318952)
chr1 (107-222)||(38480998-38481111)
chr1 (138-218)||(41728884-41728964)
chr1 (171-227)||(11343340-11343396)
chr1 (171-227)||(11501360-11501416)
chr1 (107-151)||(11343297-11343341)
chr1 (113-151)||(11501323-11501361)
chr1 (176-227)||(47445061-47445112)
[»] chr4 (23 HSPs)
chr4 (107-227)||(50664343-50664463)
chr4 (107-227)||(56065072-56065192)
chr4 (107-227)||(2217073-2217193)
chr4 (107-227)||(2613704-2613824)
chr4 (107-227)||(2614943-2615063)
chr4 (107-227)||(16506942-16507062)
chr4 (107-227)||(16508064-16508184)
chr4 (107-227)||(50663068-50663188)
chr4 (107-227)||(55978548-55978668)
chr4 (99-227)||(52896379-52896507)
chr4 (107-227)||(56063721-56063841)
chr4 (107-212)||(678448-678552)
chr4 (107-227)||(677119-677239)
chr4 (107-219)||(52897635-52897747)
chr4 (107-225)||(23101013-23101132)
chr4 (138-227)||(2215858-2215947)
chr4 (107-225)||(23102223-23102341)
chr4 (107-227)||(3880898-3881031)
chr4 (138-219)||(37004279-37004360)
chr4 (181-227)||(620543-620589)
chr4 (181-227)||(621552-621598)
chr4 (142-188)||(6768271-6768317)
chr4 (140-189)||(51615876-51615925)
[»] chr3 (25 HSPs)
chr3 (107-227)||(25580856-25580976)
chr3 (107-227)||(52118185-52118305)
chr3 (107-227)||(52946439-52946559)
chr3 (107-227)||(11032460-11032580)
chr3 (107-223)||(49725908-49726024)
chr3 (107-223)||(52947709-52947825)
chr3 (99-222)||(11033676-11033799)
chr3 (107-221)||(34649954-34650068)
chr3 (107-224)||(1137530-1137647)
chr3 (107-227)||(40954718-40954838)
chr3 (107-227)||(49724670-49724790)
chr3 (107-223)||(52116957-52117073)
chr3 (107-227)||(1136313-1136433)
chr3 (107-227)||(25582342-25582461)
chr3 (107-227)||(34651303-34651423)
chr3 (107-227)||(51150038-51150156)
chr3 (107-227)||(32610892-32611012)
chr3 (107-216)||(49964762-49964878)
chr3 (107-221)||(43640865-43640980)
chr3 (138-227)||(32612294-32612382)
chr3 (106-223)||(55455958-55456075)
chr3 (138-218)||(43643739-43643819)
chr3 (181-227)||(1576559-1576605)
chr3 (181-227)||(43546439-43546485)
chr3 (181-223)||(47470771-47470813)
[»] chr8 (17 HSPs)
chr8 (107-227)||(11680243-11680363)
chr8 (107-227)||(11681489-11681609)
chr8 (107-227)||(32672363-32672483)
chr8 (107-227)||(35123309-35123429)
chr8 (107-223)||(35124547-35124663)
chr8 (107-227)||(32673596-32673717)
chr8 (107-227)||(767526-767646)
chr8 (107-227)||(14865045-14865164)
chr8 (107-219)||(14866029-14866140)
chr8 (111-227)||(27242917-27243032)
chr8 (111-227)||(27254492-27254607)
chr8 (107-218)||(12128001-12128113)
chr8 (107-219)||(27241682-27241793)
chr8 (107-219)||(27247555-27247666)
chr8 (107-225)||(12126808-12126926)
chr8 (107-225)||(32220722-32220840)
chr8 (129-225)||(32219613-32219709)
[»] chr7 (11 HSPs)
chr7 (107-227)||(31285543-31285663)
chr7 (107-227)||(31286787-31286907)
chr7 (107-227)||(35394633-35394753)
chr7 (107-223)||(35393240-35393356)
chr7 (131-222)||(29721028-29721119)
chr7 (104-227)||(34895431-34895554)
chr7 (138-222)||(34894273-34894357)
chr7 (132-220)||(46220680-46220767)
chr7 (98-171)||(35912639-35912713)
chr7 (111-218)||(34596473-34596581)
chr7 (135-216)||(23351557-23351637)
[»] chr6 (10 HSPs)
chr6 (107-227)||(10917932-10918052)
chr6 (113-227)||(4137728-4137842)
chr6 (107-223)||(1378531-1378647)
chr6 (107-223)||(1386279-1386395)
chr6 (107-227)||(1387513-1387633)
chr6 (107-223)||(4138837-4138953)
chr6 (107-227)||(10919193-10919313)
chr6 (122-185)||(6276095-6276158)
chr6 (107-180)||(6277144-6277217)
chr6 (19-76)||(16572912-16572969)
[»] chr5 (22 HSPs)
chr5 (107-227)||(19897465-19897585)
chr5 (107-227)||(38559644-38559764)
chr5 (107-227)||(17640426-17640546)
chr5 (107-223)||(43492690-43492806)
chr5 (107-227)||(23094660-23094780)
chr5 (107-227)||(34089872-34089992)
chr5 (107-221)||(1301304-1301418)
chr5 (107-223)||(1302711-1302826)
chr5 (107-223)||(23093287-23093403)
chr5 (107-223)||(38561064-38561179)
chr5 (107-223)||(34088651-34088767)
chr5 (107-218)||(26625122-26625233)
chr5 (107-224)||(26626491-26626608)
chr5 (107-216)||(34386381-34386490)
chr5 (107-224)||(34385051-34385168)
chr5 (134-224)||(19898754-19898844)
chr5 (107-189)||(17641660-17641741)
chr5 (99-215)||(639940-640049)
chr5 (140-227)||(19877608-19877694)
chr5 (178-227)||(43492615-43492663)
chr5 (181-227)||(36429355-36429401)
chr5 (181-227)||(36681867-36681913)
[»] chr2 (19 HSPs)
chr2 (107-220)||(43201341-43201454)
chr2 (107-216)||(36764837-36764946)
chr2 (107-223)||(39618104-39618221)
chr2 (99-218)||(42684170-42684290)
chr2 (134-227)||(45227288-45227380)
chr2 (138-224)||(36766055-36766141)
chr2 (142-227)||(10865255-10865340)
chr2 (129-223)||(32946725-32946819)
chr2 (7-76)||(21629668-21629737)
chr2 (122-227)||(36657566-36657671)
chr2 (99-167)||(39619170-39619239)
chr2 (107-216)||(10175569-10175678)
chr2 (110-218)||(17600631-17600742)
chr2 (185-225)||(39619240-39619280)
chr2 (107-186)||(32947713-32947792)
chr2 (144-219)||(39259195-39259269)
chr2 (186-224)||(39619273-39619311)
chr2 (108-220)||(45228705-45228823)
chr2 (138-186)||(39257534-39257582)
[»] scaffold0102 (1 HSPs)
scaffold0102 (181-227)||(33160-33206)


Alignment Details
Target: chr1 (Bit Score: 121; Significance: 4e-62; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 99 - 227
Target Start/End: Original strand, 41706918 - 41707046
Alignment:
Q  99 tgacttgacatgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattg 198  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  41706918 tgacgtgacatgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcagcatgttggatggaggaaattaacggaggggggtaattg 41707017  T
Q  199 acagacgcttgacaatttcaggggggttt 227  Q
    |||||||||||||||||||||||||||||    
T  41707018 acagacgcttgacaatttcaggggggttt 41707046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 99 - 227
Target Start/End: Original strand, 51306205 - 51306333
Alignment:
Q  99 tgacttgacatgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattg 198  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  51306205 tgacttggcatgacttttcttaccatgtgtcagtgccacgtggcagttaacggccacatcagcatgttggatggaggaaattaacggaggggggtaattg 51306304  T
Q  199 acagacgcttgacaatttcaggggggttt 227  Q
    |||||||||||||||||||||||||||||    
T  51306305 acagacgcttgacaatttcaggggggttt 51306333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 107 - 227
Target Start/End: Original strand, 4564073 - 4564193
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  4564073 catgacttttctgaccatgtgtcagtgtcacgtggcagttaacggccacatcagcatgttggatggaggaaattaacggaggggggtaattgacagacgc 4564172  T
Q  207 ttgacaatttcaggggggttt 227  Q
    |||||||||||||||||||||    
T  4564173 ttgacaatttcaggggggttt 4564193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 107 - 227
Target Start/End: Original strand, 14284115 - 14284235
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  14284115 catgacttttttgaccatgtgtcagtgccacgtggcagttaacggccacatcagcatgttggatggaggaaattaacggaggggggtaattgacagacgc 14284214  T
Q  207 ttgacaatttcaggggggttt 227  Q
    |||||||||||||||||||||    
T  14284215 ttgacaatttcaggggggttt 14284235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 99 - 227
Target Start/End: Complemental strand, 51304938 - 51304810
Alignment:
Q  99 tgacttgacatgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattg 198  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  51304938 tgacgtgacatgacttttctgaccatgtgtcagtgccacatggcagttaacagccacatcagcatgttggatggaggaaattaacggaggggggtaattg 51304839  T
Q  199 acagacgcttgacaatttcaggggggttt 227  Q
    |||||||||||||||||||||||||||||    
T  51304838 acagacgcttgacaatttcaggggggttt 51304810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 107 - 221
Target Start/End: Original strand, 42813717 - 42813831
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  42813717 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcagcatgttggatggaggaaattaacggaggggggtaattgacagacgc 42813816  T
Q  207 ttgacaatttcaggg 221  Q
    |||||||||||||||    
T  42813817 ttgacaatttcaggg 42813831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 107 - 227
Target Start/End: Complemental strand, 11342162 - 11342042
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  11342162 catgacttttttgaccatgtgtcagtgccacgtggcagttaacggccacatcagcatgttggatgaaggaaattaacggaggggggtaattgacagacgc 11342063  T
Q  207 ttgacaatttcaggggggttt 227  Q
    |||||||||||||||||||||    
T  11342062 ttgacaatttcaggggggttt 11342042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 107 - 227
Target Start/End: Complemental strand, 11500181 - 11500061
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  11500181 catgacttttttgaccatgtgtcagtgccacgtggcagttaacggccacatcagcatgttggatgaaggaaattaacggaggggggtaattgacagacgc 11500082  T
Q  207 ttgacaatttcaggggggttt 227  Q
    |||||||||||||||||||||    
T  11500081 ttgacaatttcaggggggttt 11500061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 107 - 227
Target Start/End: Complemental strand, 14282973 - 14282853
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  14282973 catgacttttttgaccatgtgtcagtgccacgtggcagttaacggccacatcagcatgttggatggaggaaattaacggaggggggtaattgacagacgc 14282874  T
Q  207 ttgacaatttcaggggggttt 227  Q
    |||||||| ||||||||||||    
T  14282873 ttgacaatatcaggggggttt 14282853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 107 - 227
Target Start/End: Original strand, 16421981 - 16422101
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  16421981 catgacttttctaaccatgtgtcagtgccacgtggcagttaacggccacatcagcatgttggatggaggaaattaacggaggggggtaattgacagacgc 16422080  T
Q  207 ttgacaatttcaggggggttt 227  Q
    |||||||||||||||| ||||    
T  16422081 ttgacaatttcaggggagttt 16422101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 99 - 227
Target Start/End: Original strand, 41729769 - 41729897
Alignment:
Q  99 tgacttgacatgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattg 198  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||    
T  41729769 tgacgtgacatgacttttctgaccatgtgccagtgccacgtggcagttaacggccacatcggcatgttggatggaggaaattaacggagggggataattg 41729868  T
Q  199 acagacgcttgacaatttcaggggggttt 227  Q
    |||||||||||||||||||||||||||||    
T  41729869 acagacgcttgacaatttcaggggggttt 41729897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 107 - 219
Target Start/End: Complemental strand, 4562949 - 4562837
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  4562949 catgacttttttgaccatgtgtcagtgccacgtgtcagttaacggccacatcagcatgttggatggaggaaattaacggaggggggtaattgacagacgc 4562850  T
Q  207 ttgacaatttcag 219  Q
    |||||||||||||    
T  4562849 ttgacaatttcag 4562837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 107 - 227
Target Start/End: Complemental strand, 16420310 - 16420190
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  16420310 catgacttttctgaccatgtgccaatgccacgtggcagttaacggccacatcagcatgttggatggaggaaattaacggaggggggtaattgatagacgc 16420211  T
Q  207 ttgacaatttcaggggggttt 227  Q
    || ||||||||||||||||||    
T  16420210 tttacaatttcaggggggttt 16420190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 107 - 227
Target Start/End: Original strand, 46319066 - 46319186
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||    
T  46319066 catgacttttttgaccatgtgtcagagccacgtggcagttaacggccacatcagcatgttggatggaggaagttaacgaaggggggtaattgacagacgc 46319165  T
Q  207 ttgacaatttcaggggggttt 227  Q
    |||||||||||||||||||||    
T  46319166 ttgacaatttcaggggggttt 46319186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 107 - 227
Target Start/End: Original strand, 38482389 - 38482508
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  38482389 catgacttttctgaccatgtgtcagtgccacgtggcagttaacagccacatcagcatgttggatggaggaaattaacgga-gggggtaattgacagacgc 38482487  T
Q  207 ttgacaatttcaggggggttt 227  Q
    |||||||||||  ||||||||    
T  38482488 ttgacaatttccagggggttt 38482508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 107 - 227
Target Start/End: Complemental strand, 42813422 - 42813302
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||    
T  42813422 catgacttttctgaccatttgtcagtgccacgtggcagttaacggccacatcagcatgttggatgaaggaaattaacggaggggggtaattgaccgacgc 42813323  T
Q  207 ttgacaatttcaggggggttt 227  Q
    ||| |||||||||||| ||||    
T  42813322 ttggcaatttcaggggagttt 42813302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 107 - 227
Target Start/End: Complemental strand, 46318952 - 46318833
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||    
T  46318952 catgactttcctgaccatgtgtcagcgccacgtggcagttaacggccacatcagcatgttggatggaggaaattaacgga-ggaggtaattgacagacgc 46318854  T
Q  207 ttgacaatttcaggggggttt 227  Q
    ||||| |||||||||||||||    
T  46318853 ttgaccatttcaggggggttt 46318833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 107 - 222
Target Start/End: Complemental strand, 38481111 - 38480998
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||| ||||    
T  38481111 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacgga-gaggataattgaca-acgc 38481014  T
Q  207 ttgacaatttcagggg 222  Q
    ||||||||||||||||    
T  38481013 ttgacaatttcagggg 38480998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 138 - 218
Target Start/End: Complemental strand, 41728964 - 41728884
Alignment:
Q  138 gtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgcttgacaatttca 218  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  41728964 gtggcagttaacggccacatcagcatgttggatggaggaaattaacggaggggggtaattgacaaatgcttgacaatttca 41728884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 171 - 227
Target Start/End: Original strand, 11343340 - 11343396
Alignment:
Q  171 ggaggaaattaacggaggggggtaattgacagacgcttgacaatttcaggggggttt 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11343340 ggaggaaattaacggaggggggtaattgacagacgcttgacaatttcaggggggttt 11343396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 171 - 227
Target Start/End: Original strand, 11501360 - 11501416
Alignment:
Q  171 ggaggaaattaacggaggggggtaattgacagacgcttgacaatttcaggggggttt 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11501360 ggaggaaattaacggaggggggtaattgacagacgcttgacaatttcaggggggttt 11501416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 107 - 151
Target Start/End: Original strand, 11343297 - 11343341
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacgg 151  Q
    |||||||||| ||||||||||||||||||||||||||||||||||    
T  11343297 catgacttttttgaccatgtgtcagtgccacgtggcagttaacgg 11343341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 113 - 151
Target Start/End: Original strand, 11501323 - 11501361
Alignment:
Q  113 ttttctgaccatgtgtcagtgccacgtggcagttaacgg 151  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  11501323 ttttttgaccatgtgtcagtgccacgtggcagttaacgg 11501361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 47445112 - 47445061
Alignment:
Q  176 aaattaacggaggggggtaattgacagacgcttgacaatttcaggggggttt 227  Q
    |||| ||||||||||||||||||||  ||| |||||||||||| ||||||||    
T  47445112 aaataaacggaggggggtaattgactaacgtttgacaatttcatgggggttt 47445061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 117; Significance: 9e-60; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 107 - 227
Target Start/End: Original strand, 50664343 - 50664463
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  50664343 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcagcatgttggatggaggaaattaacggaggggggtaattgacagacgc 50664442  T
Q  207 ttgacaatttcaggggggttt 227  Q
    |||||||||||||||||||||    
T  50664443 ttgacaatttcaggggggttt 50664463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 107 - 227
Target Start/End: Original strand, 56065072 - 56065192
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  56065072 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcagcatgttggatggaggaaattaacggaggggggtaattgacagacgc 56065171  T
Q  207 ttgacaatttcaggggggttt 227  Q
    |||||||||||||||||||||    
T  56065172 ttgacaatttcaggggggttt 56065192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 107 - 227
Target Start/End: Original strand, 2217073 - 2217193
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  2217073 catgacttttttgaccatgtgtcagtgccacgtggcagttaacggccacatcagcatgttggatggaggaaattaacggaggggggtaattgacagacgc 2217172  T
Q  207 ttgacaatttcaggggggttt 227  Q
    |||||||||||||||||||||    
T  2217173 ttgacaatttcaggggggttt 2217193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 107 - 227
Target Start/End: Complemental strand, 2613824 - 2613704
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  2613824 catgacttttttgaccatgtgtcagtgccacgtggcagttaacggccacatcagcatgttggatggaggaaattaacggaggggggtaattgacagacgc 2613725  T
Q  207 ttgacaatttcaggggggttt 227  Q
    |||||||||||||||||||||    
T  2613724 ttgacaatttcaggggggttt 2613704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 107 - 227
Target Start/End: Original strand, 2614943 - 2615063
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  2614943 catgacttttttgaccatgtgtcagtgccacgtggcagttaacggccacatcagcatgttggatggaggaaattaacggaggggggtaattgacagacgc 2615042  T
Q  207 ttgacaatttcaggggggttt 227  Q
    |||||||||||||||||||||    
T  2615043 ttgacaatttcaggggggttt 2615063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 107 - 227
Target Start/End: Complemental strand, 16507062 - 16506942
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  16507062 catgacttttttgaccatgtgtcagtgccacgtggcagttaacggccacatcagcatgttggatggaggaaattaacggaggggggtaattgacagacgc 16506963  T
Q  207 ttgacaatttcaggggggttt 227  Q
    |||||||||||||||||||||    
T  16506962 ttgacaatttcaggggggttt 16506942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 107 - 227
Target Start/End: Original strand, 16508064 - 16508184
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  16508064 catgacttttttgaccatgtgtcagtgccacgtggcagttaacggccacatcagcatgttggatggaggaaattaacggaggggggtaattgacagacgc 16508163  T
Q  207 ttgacaatttcaggggggttt 227  Q
    |||||||||||||||||||||    
T  16508164 ttgacaatttcaggggggttt 16508184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 107 - 227
Target Start/End: Complemental strand, 50663188 - 50663068
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  50663188 catgacttttctgatcatgtgtcagtgccacgtggcagttaacggccacatcagcatgttggatggaggaaattaacggaggggggtaattgacagacgc 50663089  T
Q  207 ttgacaatttcaggggggttt 227  Q
    |||||||||||||||||||||    
T  50663088 ttgacaatttcaggggggttt 50663068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 107 - 227
Target Start/End: Complemental strand, 55978668 - 55978548
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  55978668 catgacttttttgaccatgtgtcagtgccacgtggcagttaacggccacatcagcatgttggatggaggaaattaacggaggggggtaattgacagacgc 55978569  T
Q  207 ttgacaatttcaggggggttt 227  Q
    |||||||||||||||||||||    
T  55978568 ttgacaatttcaggggggttt 55978548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 99 - 227
Target Start/End: Complemental strand, 52896507 - 52896379
Alignment:
Q  99 tgacttgacatgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattg 198  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  52896507 tgacgtgacatgacttttttgaccatgtgtcagtgccacgtggcagttaacggccacatcagcatgttggatggaggaaattaacggaggggggtaattg 52896408  T
Q  199 acagacgcttgacaatttcaggggggttt 227  Q
    |||||||||||||||||||| | ||||||    
T  52896407 acagacgcttgacaatttcaagagggttt 52896379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 107 - 227
Target Start/End: Complemental strand, 56063841 - 56063721
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||    
T  56063841 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggctacatcagcatgttggatggagaaaattaacggaggggggtaattgacagacgc 56063742  T
Q  207 ttgacaatttcaggggggttt 227  Q
    |||||||||||||||||||||    
T  56063741 ttgacaatttcaggggggttt 56063721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 107 - 212
Target Start/End: Original strand, 678448 - 678552
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  678448 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacgga-gggggtaattgacagacgc 678546  T
Q  207 ttgaca 212  Q
    ||||||    
T  678547 ttgaca 678552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 107 - 227
Target Start/End: Complemental strand, 677239 - 677119
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  677239 catgacttttttgaccatgtgtcagtgccacgtggcagttaaccgccacatcagcatgttggatggaggaaattaacgaaggggggtaattgacagacgc 677140  T
Q  207 ttgacaatttcaggggggttt 227  Q
    ||||||||||||  |||||||    
T  677139 ttgacaatttcataggggttt 677119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 107 - 219
Target Start/End: Original strand, 52897635 - 52897747
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    |||||||||| ||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  52897635 catgacttttttgaccatgtgttagtgccacgtggtagttaacggccacatcagcatgttggatggaggaaattaacggaggggggtaattgaccgacgc 52897734  T
Q  207 ttgacaatttcag 219  Q
    |||||||||||||    
T  52897735 ttgacaatttcag 52897747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 107 - 225
Target Start/End: Complemental strand, 23101132 - 23101013
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtgg-cagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacg 205  Q
    ||||| ||||||| ||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  23101132 catgatttttctggccatgtggcagtgccacgtgggcagttaacggccacatcagcatgttggatggaggatattaacggaggggggtaattgacagacg 23101033  T
Q  206 cttgacaatttcaggggggt 225  Q
    ||||||||||| ||||||||    
T  23101032 cttgacaattttaggggggt 23101013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 138 - 227
Target Start/End: Complemental strand, 2215947 - 2215858
Alignment:
Q  138 gtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgcttgacaatttcaggggggttt 227  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  2215947 gtggcagttaacggccacatcagcatgttggatggaggaaattaacggaggggggtaattgacagacgcttggcaatttcaggggggttt 2215858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 107 - 225
Target Start/End: Original strand, 23102223 - 23102341
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtgg-cagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacg 205  Q
    ||||| ||||||| ||||||| ||||||||||||| |||||||||||||||||| ||||||||||||| || ||||||||| |||||||||||||| |||    
T  23102223 catgatttttctggccatgtggcagtgccacgtgggcagttaacggccacatcagcatgttggatggaagatattaacgga-gggggtaattgacaaacg 23102321  T
Q  206 cttgacaatttcaggggggt 225  Q
    ||||||||||||||||||||    
T  23102322 cttgacaatttcaggggggt 23102341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 107 - 227
Target Start/End: Complemental strand, 3881031 - 3880898
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaac-------------ggaggggggt 193  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||             || |||||||    
T  3881031 catgacttttttgaccatgtgttagtgccacgtggcagttaacggccacatcagcatgttggatggaggaaattaacgcacggggggggggggggggggt 3880932  T
Q  194 aattgacagacgcttgacaatttcaggggggttt 227  Q
    ||||||| ||||||||||||||||||||||||||    
T  3880931 aattgaccgacgcttgacaatttcaggggggttt 3880898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 138 - 219
Target Start/End: Original strand, 37004279 - 37004360
Alignment:
Q  138 gtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgcttgacaatttcag 219  Q
    |||||||||||||| ||||||| ||||||||||| ||||||||||| |||| ||| |||||||||||||| |||||||||||    
T  37004279 gtggcagttaacggacacatcagcatgttggatgtaggaaattaacagaggagggcaattgacagacgctagacaatttcag 37004360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 620589 - 620543
Alignment:
Q  181 aacggaggggggtaattgacagacgcttgacaatttcaggggggttt 227  Q
    ||||||||||||||||||||  ||| ||| |||||||||||||||||    
T  620589 aacggaggggggtaattgactaacgtttgtcaatttcaggggggttt 620543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 621552 - 621598
Alignment:
Q  181 aacggaggggggtaattgacagacgcttgacaatttcaggggggttt 227  Q
    ||||||||||||||||||||  ||| ||| |||||||||||||||||    
T  621552 aacggaggggggtaattgactaacgtttgtcaatttcaggggggttt 621598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 188
Target Start/End: Complemental strand, 6768317 - 6768271
Alignment:
Q  142 cagttaacggccacatcaacatgttggatggaggaaattaacggagg 188  Q
    ||||||| ||||||||| ||||||| |||||||||||||||| ||||    
T  6768317 cagttaatggccacatccacatgttagatggaggaaattaactgagg 6768271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 189
Target Start/End: Complemental strand, 51615925 - 51615876
Alignment:
Q  140 ggcagttaacggccacatcaacatgttggatggaggaaattaacggaggg 189  Q
    |||||||||||| ||| ||| |||||||||||||||||| ||||| ||||    
T  51615925 ggcagttaacggtcacgtcatcatgttggatggaggaaactaacgaaggg 51615876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 117; Significance: 9e-60; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 107 - 227
Target Start/End: Complemental strand, 25580976 - 25580856
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  25580976 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcagcatgttggatggaggaaattaacggaggggggtaattgacagacgc 25580877  T
Q  207 ttgacaatttcaggggggttt 227  Q
    |||||||||||||||||||||    
T  25580876 ttgacaatttcaggggggttt 25580856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 107 - 227
Target Start/End: Original strand, 52118185 - 52118305
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  52118185 catgacttttttgaccatgtgtcagtgccacgtggcagttaacggccacatcagcatgttggatggaggaaattaacggaggggggtaattgacagacgc 52118284  T
Q  207 ttgacaatttcaggggggttt 227  Q
    |||||||||||||||||||||    
T  52118285 ttgacaatttcaggggggttt 52118305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 107 - 227
Target Start/End: Complemental strand, 52946559 - 52946439
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  52946559 catgacttttttgaccatgtgtcagtgccacgtggcagttaacggccacatcagcatgttggatggaggaaattaacggaggggggtaattgacagacgc 52946460  T
Q  207 ttgacaatttcaggggggttt 227  Q
    |||||||||||||||||||||    
T  52946459 ttgacaatttcaggggggttt 52946439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 107 - 227
Target Start/End: Complemental strand, 11032580 - 11032460
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  11032580 catgacttttttgaccatgtgtcagtgccacgtggctgttaacggccacatcagcatgttggatggaggaaattaacggaggggggtaattgacagacgc 11032481  T
Q  207 ttgacaatttcaggggggttt 227  Q
    |||||||||||||||||||||    
T  11032480 ttgacaatttcaggggggttt 11032460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 107 - 223
Target Start/End: Original strand, 49725908 - 49726024
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  49725908 catgacttttttgaccatgtgtcagtgccacgtggcagttaacggccacatcagcatgttggatggaggaaattaacggaggggggtaattgacagacgc 49726007  T
Q  207 ttgacaatttcaggggg 223  Q
    |||||||||||||||||    
T  49726008 ttgacaatttcaggggg 49726024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 107 - 223
Target Start/End: Original strand, 52947709 - 52947825
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  52947709 catgacttttttgaccatgtgtcagtgccacgtggcagttaacggccacatcagcatgttggatggaggaaattaacggaggggggtaattgacagacgc 52947808  T
Q  207 ttgacaatttcaggggg 223  Q
    |||||||||||||||||    
T  52947809 ttgacaatttcaggggg 52947825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 99 - 222
Target Start/End: Original strand, 11033676 - 11033799
Alignment:
Q  99 tgacttgacatgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattg 198  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  11033676 tgacgtgacatgacttttttgaccatgtgtcagtgccacgtggcagttaacggccacatcagcaagttggatggaggaaattaacggaggggggtaattg 11033775  T
Q  199 acagacgcttgacaatttcagggg 222  Q
    ||||||||||||||||||||||||    
T  11033776 acagacgcttgacaatttcagggg 11033799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 107 - 221
Target Start/End: Complemental strand, 34650068 - 34649954
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  34650068 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcagcatgttggatggaggaaattaacggagggggataattgacagacgc 34649969  T
Q  207 ttgacaatttcaggg 221  Q
    |||||||||||||||    
T  34649968 ttgacaatttcaggg 34649954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 107 - 224
Target Start/End: Original strand, 1137530 - 1137647
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  1137530 catgacttttttgaccatgtgtcagtgccacgtggcagttaacggccacattagcatgttggatggaggaaattaacggaggggggtaattgacagacgc 1137629  T
Q  207 ttgacaatttcagggggg 224  Q
    ||||||||||||||||||    
T  1137630 ttgacaatttcagggggg 1137647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 107 - 227
Target Start/End: Complemental strand, 40954838 - 40954718
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    |||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  40954838 catgacttttttgaccatgtgccagtgccacgtggcagttaacggccacatcagcatgttggatggtggaaattaacggaggggggtaattgacagacgc 40954739  T
Q  207 ttgacaatttcaggggggttt 227  Q
    |||||||||||||||||||||    
T  40954738 ttgacaatttcaggggggttt 40954718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 107 - 227
Target Start/End: Complemental strand, 49724790 - 49724670
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  49724790 catgacttttttgaccatgtgtcagtgccacgtggcagttaacggccacatcagcatgttggatggaggaaattaacggagggggataattgacagacgc 49724691  T
Q  207 ttgacaatttcaggggggttt 227  Q
    ||||||||||||| |||||||    
T  49724690 ttgacaatttcagtggggttt 49724670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 107 - 223
Target Start/End: Complemental strand, 52117073 - 52116957
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  52117073 catgacttttttgaccatgtgtcagtgccacgtggcagttaacggccacatcagcatgttggatggaggaaattaacggaggggggtaattgacagacgc 52116974  T
Q  207 ttgacaatttcaggggg 223  Q
    |||||||||| ||||||    
T  52116973 ttgacaattttaggggg 52116957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 107 - 227
Target Start/End: Complemental strand, 1136433 - 1136313
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  1136433 catgacttttttgaccatgtgtcagtgccatgtggcagttaacggccacatcagcatgttggatggaggaaattaacggaggagggtaattgacagacgc 1136334  T
Q  207 ttgacaatttcaggggggttt 227  Q
     ||||||||||||||||||||    
T  1136333 gtgacaatttcaggggggttt 1136313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 107 - 227
Target Start/End: Original strand, 25582342 - 25582461
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||    
T  25582342 catgacttttctgaccatgtgccagtgccacgtggcagttaacggccacatcagcatgttggatggaggaaattaatgga-gggggtaattgacagacgc 25582440  T
Q  207 ttgacaatttcaggggggttt 227  Q
    |||||||||||||||||||||    
T  25582441 ttgacaatttcaggggggttt 25582461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 107 - 227
Target Start/End: Original strand, 34651303 - 34651423
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||  |    
T  34651303 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcagcatgttggatgaagaaaattaacggaggggggtaattgacagaaac 34651402  T
Q  207 ttgacaatttcaggggggttt 227  Q
    |||||||||||||||||||||    
T  34651403 ttgacaatttcaggggggttt 34651423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 107 - 227
Target Start/End: Complemental strand, 51150156 - 51150038
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||   |||||||||||||||||||    
T  51150156 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcagcatgttggatggaggaaattaacg--agggggtaattgacagacgc 51150059  T
Q  207 ttgacaatttcaggggggttt 227  Q
    ||||||||||||| |||||||    
T  51150058 ttgacaatttcagaggggttt 51150038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 107 - 227
Target Start/End: Complemental strand, 32611012 - 32610892
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    ||||||||||||||||||||| |||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||| |||||||||||||||||    
T  32611012 catgacttttctgaccatgtggcagtgccacgtggcagttaacgaccacatcagcttgttggatggaggaaattaacggaggagggtaattgacagacgc 32610913  T
Q  207 ttgacaatttcaggggggttt 227  Q
    |||| ||||||| ||| ||||    
T  32610912 ttgaaaatttcatgggagttt 32610892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 107 - 216
Target Start/End: Complemental strand, 49964878 - 49964762
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgcca------cgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggg-gtaattga 199  Q
    ||||||||||||||||||||||||||||||      ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||    
T  49964878 catgacttttctgaccatgtgtcagtgccagtgccacgtggcagttaacggccacatcagcatgttggatggaggaaattaacagagggggagtaattga 49964779  T
Q  200 cagacgcttgacaattt 216  Q
    |||||||||||||||||    
T  49964778 cagacgcttgacaattt 49964762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 107 - 221
Target Start/End: Complemental strand, 43640980 - 43640865
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggg-gggtaattgacagacg 205  Q
    |||||||||| ||| ||||||  ||||||||||||| |||||| || |  ||| ||||||||||||||||||||||||||||| || || ||||| ||||    
T  43640980 catgacttttttgatcatgtggtagtgccacgtggctgttaacagcaatgtcagcatgttggatggaggaaattaacggagggaggttatttgactgacg 43640881  T
Q  206 cttgacaatttcaggg 221  Q
     |||||||||||||||    
T  43640880 tttgacaatttcaggg 43640865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 138 - 227
Target Start/End: Original strand, 32612294 - 32612382
Alignment:
Q  138 gtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgcttgacaatttcaggggggttt 227  Q
    |||||||||||||||||||||| ||||||||||||| |||||||| ||| ||| ||||||| ||||||||||||| ||| || |||||||    
T  32612294 gtggcagttaacggccacatcagcatgttggatggaagaaattaatgga-gggagtaattggcagacgcttgacactttaagaggggttt 32612382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 106 - 223
Target Start/End: Complemental strand, 55456075 - 55455958
Alignment:
Q  106 acatgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacg 205  Q
    |||||| |||| ||| |||||| ||||||||||||||||||||| | ||  ||| | |||||||||||||||||||||||||| ||||| ||||  |||     
T  55456075 acatgatttttttgatcatgtggcagtgccacgtggcagttaacagtcatgtcagcgtgttggatggaggaaattaacggaggagggtatttgattgact 55455976  T
Q  206 cttgacaatttcaggggg 223  Q
      ||||||||||||||||    
T  55455975 tatgacaatttcaggggg 55455958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 218
Target Start/End: Original strand, 43643739 - 43643819
Alignment:
Q  138 gtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgcttgacaatttca 218  Q
    |||||||||||| ||||  ||| |||||||||||||||||||||||||| || |||| |||||  | | ||||||||||||    
T  43643739 gtggcagttaacagccatgtcagcatgttggatggaggaaattaacggatggaggtatttgactaatgtttgacaatttca 43643819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 1576605 - 1576559
Alignment:
Q  181 aacggaggggggtaattgacagacgcttgacaatttcaggggggttt 227  Q
    ||||||||||||||||||||  ||| ||| |||||||||||||||||    
T  1576605 aacggaggggggtaattgactaacgtttgtcaatttcaggggggttt 1576559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 43546485 - 43546439
Alignment:
Q  181 aacggaggggggtaattgacagacgcttgacaatttcaggggggttt 227  Q
    |||||||||||||||||||| |||| |||| |||||||| |||||||    
T  43546485 aacggaggggggtaattgactgacgtttgataatttcagaggggttt 43546439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 223
Target Start/End: Complemental strand, 47470813 - 47470771
Alignment:
Q  181 aacggaggggggtaattgacagacgcttgacaatttcaggggg 223  Q
    |||||||||||||||||||| |||| |||| ||||||||||||    
T  47470813 aacggaggggggtaattgactgacgtttgataatttcaggggg 47470771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 113; Significance: 2e-57; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 107 - 227
Target Start/End: Complemental strand, 11680363 - 11680243
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  11680363 catgacttttttgaccatgtgtcagtgccacgtggcagttaacggccacatcagcatgttggatggaggaaattaacggaggggggtaattgacagacgc 11680264  T
Q  207 ttgacaatttcaggggggttt 227  Q
    |||||||||||||||||||||    
T  11680263 ttgacaatttcaggggggttt 11680243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 107 - 227
Target Start/End: Original strand, 11681489 - 11681609
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  11681489 catgacttttttgaccatgtgtcagtgccacgtggcagttaacggccacatcagcatgttggatggaggaaattaacggaggggggtaattgacagacgc 11681588  T
Q  207 ttgacaatttcaggggggttt 227  Q
    || ||||||||||||||||||    
T  11681589 ttaacaatttcaggggggttt 11681609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 107 - 227
Target Start/End: Complemental strand, 32672483 - 32672363
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  32672483 catgacttttttgaccatgtgtcagtgccacgtggcagttaacggccacatcagcatgttggatggatgaaattaacggaggggggtaattgacagacgc 32672384  T
Q  207 ttgacaatttcaggggggttt 227  Q
    |||||||||||||||||||||    
T  32672383 ttgacaatttcaggggggttt 32672363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 107 - 227
Target Start/End: Complemental strand, 35123429 - 35123309
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  35123429 catgacttttttgaccatgtgtcagtgccacgtggcagttaacggccacatcagcatgttggatggaggaaattaacggagggggataattgacagacgc 35123330  T
Q  207 ttgacaatttcaggggggttt 227  Q
    |||||||||||||||||||||    
T  35123329 ttgacaatttcaggggggttt 35123309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 107 - 223
Target Start/End: Original strand, 35124547 - 35124663
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  35124547 catgacttttttgaccatgtgtcagtgccacgtggcagttaacggccacatcagcatgttggatggaggaaattaacggaggggggtaattgacagacgc 35124646  T
Q  207 ttgacaatttcaggggg 223  Q
    |||||||||||||||||    
T  35124647 ttgacaatttcaggggg 35124663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 107 - 227
Target Start/End: Original strand, 32673596 - 32673717
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacgg-aggggggtaattgacagacg 205  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  32673596 catgacttttttgaccatgtgtcagtgccacgtggcagttaacggccacatcagcatgttggatggaggaaattaacggaaggggggtaattgacagacg 32673695  T
Q  206 cttgacaatttcaggggggttt 227  Q
    ||||||||||||||||||||||    
T  32673696 cttgacaatttcaggggggttt 32673717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 107 - 227
Target Start/End: Original strand, 767526 - 767646
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    |||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  767526 catgacttttttgaccatgtgtcagtgccacgtggcagttaacgaccacatcagcatgttggattgaggaaattaacggaggggggtaattgacagacgc 767625  T
Q  207 ttgacaatttcaggggggttt 227  Q
    |||||||||||||||||||||    
T  767626 ttgacaatttcaggggggttt 767646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 107 - 227
Target Start/End: Complemental strand, 14865164 - 14865045
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||    
T  14865164 catgacttttttgaccatgtgtcagcgccacgtggcagttaacggccacatcagcatgttggatggaggaaattaacggag-ggggtaattgacagacgc 14865066  T
Q  207 ttgacaatttcaggggggttt 227  Q
    |||||||||||||||||||||    
T  14865065 ttgacaatttcaggggggttt 14865045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 107 - 219
Target Start/End: Original strand, 14866029 - 14866140
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  14866029 catgacttttttgaccatgtgtcagcgccacgtggcagttaacggccacatcagcatgttggatggaggaaattaacgga-gggggtaattgacagacgc 14866127  T
Q  207 ttgacaatttcag 219  Q
    |||||||||||||    
T  14866128 ttgacaatttcag 14866140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 111 - 227
Target Start/End: Original strand, 27242917 - 27243032
Alignment:
Q  111 acttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgcttga 210  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  27242917 acttttttaaccatgtgtcagtgccacgtggcagttaacggccacatcagcatgttggatggaggaaattaacgga-gggggtaattgacggacgcttga 27243015  T
Q  211 caatttcaggggggttt 227  Q
    |||||||||||| ||||    
T  27243016 caatttcaggggagttt 27243032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 111 - 227
Target Start/End: Original strand, 27254492 - 27254607
Alignment:
Q  111 acttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgcttga 210  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  27254492 acttttataaccatgtgtcagtgccacgtggcagttaacggccacatcagcatgttggatggaggaaattaacgga-gggggtaattgacggacgcttga 27254590  T
Q  211 caatttcaggggggttt 227  Q
    |||||||||||| ||||    
T  27254591 caatttcaggggagttt 27254607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 107 - 218
Target Start/End: Original strand, 12128001 - 12128113
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtgg-cagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacg 205  Q
    ||||| ||||||| ||||||| ||||||||||||| |||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||    
T  12128001 catgatttttctggccatgtggcagtgccacgtgggcagttaacggccacatcagcatgttggatggaagatattaacggaggggggtaattgacagacg 12128100  T
Q  206 cttgacaatttca 218  Q
    |||||||||||||    
T  12128101 cttgacaatttca 12128113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 107 - 219
Target Start/End: Complemental strand, 27241793 - 27241682
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||| ||||||||||||||    
T  27241793 catgactttttttaccatgtgtcagtgccacgtggcagttaacggccacatcagcatgttggatggagaaaattaacgga-ggggataattgacagacgc 27241695  T
Q  207 ttgacaatttcag 219  Q
    |||||||| ||||    
T  27241694 ttgacaatatcag 27241682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 107 - 219
Target Start/End: Complemental strand, 27247666 - 27247555
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||| ||||||||||||||    
T  27247666 catgactttttttaccatgtgtcagtgccacgtggcagttaacggccacatcagcatgttggatggagaaaattaacgga-ggggataattgacagacgc 27247568  T
Q  207 ttgacaatttcag 219  Q
    |||||||| ||||    
T  27247567 ttgacaatatcag 27247555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 107 - 225
Target Start/End: Complemental strand, 12126926 - 12126808
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtgg-cagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacg 205  Q
    ||||| ||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||  |||||||||||||||||    
T  12126926 catgatttttctggccatgtggcagtgccacgtgggcagttaacggccacatcaacatgttggatggaggatattaacgga-aggggtaattgacagacg 12126828  T
Q  206 cttgacaatttcaggggggt 225  Q
    ||| ||||||||||||||||    
T  12126827 cttaacaatttcaggggggt 12126808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 107 - 225
Target Start/End: Original strand, 32220722 - 32220840
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtgg-cagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacg 205  Q
    ||||| ||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||| || |||||| || ||||||||||||||||||    
T  32220722 catgatttttctggccatgtggcagtgccacgtgggcagttaacggccacatcaacatgttggatggatgatattaaccga-gggggtaattgacagacg 32220820  T
Q  206 cttgacaatttcaggggggt 225  Q
    ||||||||||| | ||||||    
T  32220821 cttgacaattttaagggggt 32220840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 129 - 225
Target Start/End: Complemental strand, 32219709 - 32219613
Alignment:
Q  129 cagtgccacgtgg-cagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgcttgacaatttcaggggggt 225  Q
    ||||||||| ||| |||||||||||||||||| |||||||||||||||| | ||||| |||||| |||||||||||||||||||||||||||||||||    
T  32219709 cagtgccacatggacagttaacggccacatcagcatgttggatggaggatactaacgaaggggg-taattgacagacgcttgacaatttcaggggggt 32219613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 113; Significance: 2e-57; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 107 - 227
Target Start/End: Complemental strand, 31285663 - 31285543
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  31285663 catgacttttttgaccatgtgtcagtgccacgtggcagttaacggccacatcagcatgttggatggaggaaattaacggaggggggtaattgacagacgc 31285564  T
Q  207 ttgacaatttcaggggggttt 227  Q
    |||||||||||||||||||||    
T  31285563 ttgacaatttcaggggggttt 31285543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 107 - 227
Target Start/End: Original strand, 31286787 - 31286907
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  31286787 catgacttttttgaccatgtgtcagtgccacgtggcagttaacggccacatcagcatgttggatggaggaaattaacggaggggggtaattgacagacgc 31286886  T
Q  207 ttgacaatttcaggggggttt 227  Q
    |||||||| ||||||||||||    
T  31286887 ttgacaatatcaggggggttt 31286907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 107 - 227
Target Start/End: Original strand, 35394633 - 35394753
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||    
T  35394633 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcagcatgttggatggaggaaattaacggaggggggtaattgacagatgc 35394732  T
Q  207 ttgacaatttcaggggggttt 227  Q
    |||||||||||| ||||||||    
T  35394733 ttgacaatttcatgggggttt 35394753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 107 - 223
Target Start/End: Complemental strand, 35393356 - 35393240
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  35393356 catgacttttcttaccatgtgtcagtgccacgtggcagttaacagccacatcagcatgttggatggaggaaattaacggagggggataattgacagacgc 35393257  T
Q  207 ttgacaatttcaggggg 223  Q
    |||||||||||||||||    
T  35393256 ttgacaatttcaggggg 35393240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 131 - 222
Target Start/End: Original strand, 29721028 - 29721119
Alignment:
Q  131 gtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgcttgacaatttcagggg 222  Q
    ||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  29721028 gtgccacgtggcagttaacagccacatcagcatcttggatggaggaaattaacggaggggggtaattgacaaacgcttgacaatttcagggg 29721119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 104 - 227
Target Start/End: Original strand, 34895431 - 34895554
Alignment:
Q  104 tgacatgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacaga 203  Q
    ||||||||||||| ||| ||| |  ||||||||||||||| ||||| ||||  ||| ||||||| |||||||||||||||||||||||||| ||||| ||    
T  34895431 tgacatgacttttttgatcatatagcagtgccacgtggcaattaacagccatgtcagcatgttgaatggaggaaattaacggaggggggtatttgactga 34895530  T
Q  204 cgcttgacaatttcaggggggttt 227  Q
    || |||||||||||| ||| ||||    
T  34895531 cgtttgacaatttcaagggagttt 34895554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 34894357 - 34894273
Alignment:
Q  138 gtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgcttgacaatttcagggg 222  Q
    ||||||||||||  |||  ||| |||||||||||||||||||||||||| ||||||| ||||| |||| ||||||||||||||||    
T  34894357 gtggcagttaacatccatgtcagcatgttggatggaggaaattaacggatgggggtatttgactgacgtttgacaatttcagggg 34894273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 132 - 220
Target Start/End: Original strand, 46220680 - 46220767
Alignment:
Q  132 tgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgcttgacaatttcagg 220  Q
    |||||||||||||||||||||||  ||||||| ||||| |||||||| || |||| ||||||| ||||  |||| |||| |||||||||    
T  46220680 tgccacgtggcagttaacggccatgtcaacatattggagggaggaaactagcgga-gggggtatttgattgacgtttgataatttcagg 46220767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 98 - 171
Target Start/End: Original strand, 35912639 - 35912713
Alignment:
Q  98 ttgacttgacatgacttttctgaccatgtgtcagtgccacgtgg-cagttaacggccacatcaacatgttggatg 171  Q
    ||||| ||||||||||||| ||| |||||| ||||||||||||| ||||||||   ||| |||||||||||||||    
T  35912639 ttgacgtgacatgacttttttgatcatgtggcagtgccacgtggacagttaacaatcacgtcaacatgttggatg 35912713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 218
Target Start/End: Complemental strand, 34596581 - 34596473
Alignment:
Q  111 acttttctgaccatgtgtcagtgccacgtgg-cagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgcttg 209  Q
    ||||||||||||| ||||||||| ||||| | ||||||||  |||| | | |||||| ||   || ||| |||||||||| |||| |||||||||| |||    
T  34596581 acttttctgaccacgtgtcagtgtcacgttgacagttaacaaccacgttagcatgttagacatagaaaactaacggagggaggtatttgacagacgtttg 34596482  T
Q  210 acaatttca 218  Q
    |||||||||    
T  34596481 acaatttca 34596473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 216
Target Start/End: Original strand, 23351557 - 23351637
Alignment:
Q  135 cacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgcttgacaattt 216  Q
    ||||||||| ||||| | ||  ||||||||||||||||| ||||||||||||  | |||| ||||| |||| ||||||||||    
T  23351557 cacgtggcaattaacagtcatgtcaacatgttggatggaagaaattaacgga-tgtggtatttgactgacgtttgacaattt 23351637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 113; Significance: 2e-57; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 107 - 227
Target Start/End: Complemental strand, 10918052 - 10917932
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  10918052 catgacttttttgaccatgtgtcagtgccacgtggcagttaacggccacatcagcatgttggatggaggaaattaacggaggggggtaattgacagacgc 10917953  T
Q  207 ttgacaatttcaggggggttt 227  Q
    |||||||||||||||||||||    
T  10917952 ttgacaatttcaggggggttt 10917932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 113 - 227
Target Start/End: Complemental strand, 4137842 - 4137728
Alignment:
Q  113 ttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgcttgaca 212  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4137842 ttttttgaccatgtgtcagtgccacgtggcagttaacggccacatcagcatgttggatggaggaaattaacggaggggggtaattgacagacgcttgaca 4137743  T
Q  213 atttcaggggggttt 227  Q
    |||||||||||||||    
T  4137742 atttcaggggggttt 4137728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 107 - 223
Target Start/End: Complemental strand, 1378647 - 1378531
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  1378647 catgacttttttgaccatgtgtcagtgccacgtgacagttaacggccacatcagcatgttggatggaggaaattaacggaggggggtaattgacagacgc 1378548  T
Q  207 ttgacaatttcaggggg 223  Q
    |||||||||||||||||    
T  1378547 ttgacaatttcaggggg 1378531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 107 - 223
Target Start/End: Complemental strand, 1386395 - 1386279
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  1386395 catgacttttttgaccatgtgtcagtgccacgtgacagttaacggccacatcagcatgttggatggaggaaattaacggaggggggtaattgacagacgc 1386296  T
Q  207 ttgacaatttcaggggg 223  Q
    |||||||||||||||||    
T  1386295 ttgacaatttcaggggg 1386279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 107 - 227
Target Start/End: Original strand, 1387513 - 1387633
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  1387513 catgacttttttgaccatgtgtcagtgccacgtggcagttaacggccacatcagcatgttggatggaggaaattaacggaggagggtaattgacagacgc 1387612  T
Q  207 ttgacaatttcaggggggttt 227  Q
    |||||||||||| ||||||||    
T  1387613 ttgacaatttcaagggggttt 1387633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 107 - 223
Target Start/End: Original strand, 4138837 - 4138953
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  4138837 catgacttttttgaccatgtgtcagtgccacgtggcagttaacggccacatcagcatgttggatggaggaaattaacggaggggggtaattgaccgacgc 4138936  T
Q  207 ttgacaatttcaggggg 223  Q
    |||||||||||||||||    
T  4138937 ttgacaatttcaggggg 4138953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 107 - 227
Target Start/End: Original strand, 10919193 - 10919313
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    |||||||||| | ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  10919193 catgacttttttaaccatgtgtcagtgccacgtggcagttaacgtccacatcagcatgttggatggaggaaattaacggaggggggtaattgacagacgc 10919292  T
Q  207 ttgacaatttcaggggggttt 227  Q
    |||||||||||||||||||||    
T  10919293 ttgacaatttcaggggggttt 10919313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 122 - 185
Target Start/End: Complemental strand, 6276158 - 6276095
Alignment:
Q  122 catgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacgg 185  Q
    |||||| ||||||||| |||||||||||  |||  |||||||||||||||||||||||||||||    
T  6276158 catgtggcagtgccacatggcagttaacaaccatgtcaacatgttggatggaggaaattaacgg 6276095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 107 - 180
Target Start/End: Original strand, 6277144 - 6277217
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaatt 180  Q
    |||||||||| ||| |||||| |||||||||||||||||||||  |||  ||| |||||| |||||||||||||    
T  6277144 catgacttttttgatcatgtggcagtgccacgtggcagttaacaaccatgtcagcatgttagatggaggaaatt 6277217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 16572912 - 16572969
Alignment:
Q  19 gttggattgcaataccactgcttcaggtggctggcatcaagacatgtcctattctcaa 76  Q
    ||||||||||| | || || ||||||||||| ||| | ||||||||||||||||||||    
T  16572912 gttggattgcactgccgctccttcaggtggcaggcgtgaagacatgtcctattctcaa 16572969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 113; Significance: 2e-57; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 107 - 227
Target Start/End: Complemental strand, 19897585 - 19897465
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  19897585 catgacttttttgaccatgtgtcagtgccacgtggcagttaacggccacatcagcatgttggatggaggaaattaacggaggggggtaattgacagacgc 19897486  T
Q  207 ttgacaatttcaggggggttt 227  Q
    |||||||||||||||||||||    
T  19897485 ttgacaatttcaggggggttt 19897465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 107 - 227
Target Start/End: Complemental strand, 38559764 - 38559644
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||    
T  38559764 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcagcatgttggatggaggaaattaacggaggggggtaattgacagatgc 38559665  T
Q  207 ttgacaatttcaggggggttt 227  Q
    |||||||||||||||||||||    
T  38559664 ttgacaatttcaggggggttt 38559644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 107 - 227
Target Start/End: Complemental strand, 17640546 - 17640426
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  17640546 catgacttttttgaccatgtgtcagtgccacgtggcagttaacggccacatcagcatgttggatgaaggaaattaacggaggggggtaattgacagacgc 17640447  T
Q  207 ttgacaatttcaggggggttt 227  Q
    |||||||||||||||||||||    
T  17640446 ttgacaatttcaggggggttt 17640426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 107 - 223
Target Start/End: Original strand, 43492690 - 43492806
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43492690 catgacttttctgaccatgtgtaagtgccacgcggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 43492789  T
Q  207 ttgacaatttcaggggg 223  Q
    |||||||||||||||||    
T  43492790 ttgacaatttcaggggg 43492806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 107 - 227
Target Start/End: Original strand, 23094660 - 23094780
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||    
T  23094660 catgacttttctgaccatgtgtcagtgccacgtggtagttaacggccacatcagcatgttggatggaggaaattaacggagggggataattgacatacgc 23094759  T
Q  207 ttgacaatttcaggggggttt 227  Q
    |||||||||||||||||||||    
T  23094760 ttgacaatttcaggggggttt 23094780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 107 - 227
Target Start/End: Original strand, 34089872 - 34089992
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  34089872 catgacttttttgaccatgtgtcagtgccacgtggcagttaacggccacatcagcatgttggatggaggaaattaacggagggggataattgacagacgc 34089971  T
Q  207 ttgacaatttcaggggggttt 227  Q
    ||||||||||||| |||||||    
T  34089972 ttgacaatttcagaggggttt 34089992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 107 - 221
Target Start/End: Complemental strand, 1301418 - 1301304
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  1301418 catgacttttctgaccatgtgtcagtgccacgtggccgttaacggccacatcagcatgttggatggatgaaattaacggaggggggtaattgacagacgc 1301319  T
Q  207 ttgacaatttcaggg 221  Q
    |||||||||||||||    
T  1301318 ttgacaatttcaggg 1301304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 107 - 223
Target Start/End: Original strand, 1302711 - 1302826
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  1302711 catgacttttctgaccatgtgtcagtgccacgtggcagttaacagccacatcagcatgttggatggaggaaattaacgga-gggggtaattgacagacgc 1302809  T
Q  207 ttgacaatttcaggggg 223  Q
    |||||||||||||||||    
T  1302810 ttgacaatttcaggggg 1302826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 107 - 223
Target Start/End: Complemental strand, 23093403 - 23093287
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    ||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  23093403 catgacttttctgaccatgtgtcagtgtcacgtggcagttaacagctacatcaacatgttggatggaggaaattaacggagggggataattgacagacgc 23093304  T
Q  207 ttgacaatttcaggggg 223  Q
    |||||||||||||||||    
T  23093303 ttgacaatttcaggggg 23093287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 107 - 223
Target Start/End: Original strand, 38561064 - 38561179
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  38561064 catgacttttctgaccatgtgtcagtgccacgtggcagttaacagccacatcagcatgttggatggaggaaattaacgga-gggggtaattgacagacgc 38561162  T
Q  207 ttgacaatttcaggggg 223  Q
    |||||||||||||||||    
T  38561163 ttgacaatttcaggggg 38561179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 107 - 223
Target Start/End: Complemental strand, 34088767 - 34088651
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    |||||||||| |||||||||||||||||||||||| ||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  34088767 catgacttttttgaccatgtgtcagtgccacgtggtagttaacggtcacatcagcgtgttggatggaggaaattaacggaggggggtaattgacagacgc 34088668  T
Q  207 ttgacaatttcaggggg 223  Q
    |||||||||||||||||    
T  34088667 ttgacaatttcaggggg 34088651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 107 - 218
Target Start/End: Complemental strand, 26625233 - 26625122
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||    
T  26625233 catgacttttctgaccatgtgtcagtgccacgtggctgttaacggccacatcagcatgttggatggaggaaattaacggatgagggtaattgacagacgc 26625134  T
Q  207 ttgacaatttca 218  Q
    ||||||||||||    
T  26625133 ttgacaatttca 26625122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 107 - 224
Target Start/End: Original strand, 26626491 - 26626608
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    |||||||||||| || |||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  26626491 catgacttttctaactatgtgtcattgtcacgtggcagttaacggccacatcagcatgttggatggaggaaattaacggaggggcgtaattgacagacgc 26626590  T
Q  207 ttgacaatttcagggggg 224  Q
    ||||||||||||||||||    
T  26626591 ttgacaatttcagggggg 26626608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 107 - 216
Target Start/End: Original strand, 34386381 - 34386490
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    ||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34386381 catgatttttctgaccatgtggcagtgccacatggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 34386480  T
Q  207 ttgacaattt 216  Q
    |||| |||||    
T  34386481 ttgataattt 34386490  T

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Target: chr5; HSP #15
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 107 - 224
Target Start/End: Complemental strand, 34385168 - 34385051
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||| |||||||||||| |||| |||||||||||||||||    
T  34385168 catgacttttctgaccatgtggcagtgccacatggcagttaacggccacatcagcatgttggatagaggaaattaacagaggagggtaattgacagacgc 34385069  T
Q  207 ttgacaatttcagggggg 224  Q
    |||||||||||| |||||    
T  34385068 ttgacaatttcaaggggg 34385051  T

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Target: chr5; HSP #16
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 134 - 224
Target Start/End: Original strand, 19898754 - 19898844
Alignment:
Q  134 ccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgcttgacaatttcagggggg 224  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  19898754 ccacgtggcagttaacggccacatcagcatgttggatggaggaaattaacggaggggggtaattgaccgacgcttgacaatttcggggggg 19898844  T

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Target: chr5; HSP #17
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 107 - 189
Target Start/End: Original strand, 17641660 - 17641741
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggg 189  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  17641660 catgactttt-tgaccatgtgtcagtgccacgtggcagttaatggccacatcagcatgttggatggaggaaattaacggaggg 17641741  T

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Target: chr5; HSP #18
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 99 - 215
Target Start/End: Complemental strand, 640049 - 639940
Alignment:
Q  99 tgacttgacatgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattg 198  Q
    |||| ||||||||||||||||||    || ||||||| | ||||||||||||||||||||| |||||| |||||||||||||||||||  ||||||||||    
T  640049 tgacgtgacatgacttttctgac----tg-cagtgccgcatggcagttaacggccacatcagcatgtttgatggaggaaattaacgga--ggggtaattg 639957  T
Q  199 acagacgcttgacaatt 215  Q
    |||||||||||||||||    
T  639956 acagacgcttgacaatt 639940  T

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Target: chr5; HSP #19
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 140 - 227
Target Start/End: Original strand, 19877608 - 19877694
Alignment:
Q  140 ggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgcttgacaatttcaggggggttt 227  Q
    |||||||||||||||  ||| |||||||||||||||||||| ||||| ||| ||||||| ||| ||||| ||||||||||||||||||    
T  19877608 ggcagttaacggccatgtcagcatgttggatggaggaaattgacgga-gggagtaattggcaggcgcttaacaatttcaggggggttt 19877694  T

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Target: chr5; HSP #20
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 178 - 227
Target Start/End: Complemental strand, 43492663 - 43492615
Alignment:
Q  178 attaacggaggggggtaattgacagacgcttgacaatttcaggggggttt 227  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  43492663 attaacggaggggg-taattgacagacgcttgacaatttcaggggggttt 43492615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 36429401 - 36429355
Alignment:
Q  181 aacggaggggggtaattgacagacgcttgacaatttcaggggggttt 227  Q
    |||||||||||||||||||| |||| |||| ||||||||||| ||||    
T  36429401 aacggaggggggtaattgactgacgtttgataatttcaggggcgttt 36429355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 36681867 - 36681913
Alignment:
Q  181 aacggaggggggtaattgacagacgcttgacaatttcaggggggttt 227  Q
    ||||||||||||||||||||  ||| |||||||||||| ||||||||    
T  36681867 aacggaggggggtaattgactaacgtttgacaatttcatgggggttt 36681913  T

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Target: chr2 (Bit Score: 106; Significance: 3e-53; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 107 - 220
Target Start/End: Original strand, 43201341 - 43201454
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||    
T  43201341 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggagaggagtaattgacagacgc 43201440  T
Q  207 ttgacaatttcagg 220  Q
    ||||||||||||||    
T  43201441 ttgacaatttcagg 43201454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 107 - 216
Target Start/End: Complemental strand, 36764946 - 36764837
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgc 206  Q
    ||||||||||||||||||||| | ||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  36764946 catgacttttctgaccatgtggcggtgccacgtggcaattaacggccacattagcatgttggatggaggaaattaacggaggggggtaattgacagacgc 36764847  T
Q  207 ttgacaattt 216  Q
    ||||||||||    
T  36764846 ttgacaattt 36764837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 107 - 223
Target Start/End: Complemental strand, 39618221 - 39618104
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtgg-cagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacg 205  Q
    ||||| |||| || ||||||| ||||||||||||| |||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||    
T  39618221 catgatttttttggccatgtgacagtgccacgtgggcagttaacggccacatcagcatgttggatggaagatattaacggaggggggtaattgacagacg 39618122  T
Q  206 cttgacaatttcaggggg 223  Q
    ||||||||||||||||||    
T  39618121 cttgacaatttcaggggg 39618104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 99 - 218
Target Start/End: Complemental strand, 42684290 - 42684170
Alignment:
Q  99 tgacttgacatgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggag-gggggtaatt 197  Q
    |||| ||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||    
T  42684290 tgacgtgatatgacttttctgaccatgtggcagtgccacatggcagttaacggccacatcagcatgttggatggaggaaattaacagagagggggtaatt 42684191  T
Q  198 gacagacgcttgacaatttca 218  Q
    ||| | | |||||||||||||    
T  42684190 gaccggcacttgacaatttca 42684170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 134 - 227
Target Start/End: Complemental strand, 45227380 - 45227288
Alignment:
Q  134 ccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgcttgacaatttcaggggggttt 227  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  45227380 ccacgtggcagttaacagccacatcatcatgttggatggaggaaattaacgga-ggggataattgacagacgcttgacaatttcaggggggttt 45227288  T

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Target: chr2; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 138 - 224
Target Start/End: Original strand, 36766055 - 36766141
Alignment:
Q  138 gtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgcttgacaatttcagggggg 224  Q
    |||||||||||| ||||||||| || ||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||    
T  36766055 gtggcagttaactgccacatcagcacgttggatggaggaaattagtggaggggtgtaattgacagacgcttgacaatttcagggggg 36766141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 142 - 227
Target Start/End: Complemental strand, 10865340 - 10865255
Alignment:
Q  142 cagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgcttgacaatttcaggggggttt 227  Q
    |||||||| | ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  10865340 cagttaaccgtcacatcagcatgttagatggaggaaattaacggaggggggtaattgacagacgcttgataatttcaggagggttt 10865255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 129 - 223
Target Start/End: Complemental strand, 32946819 - 32946725
Alignment:
Q  129 cagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgcttgacaatttcaggggg 223  Q
    ||||||||||||||||||||| ||||  ||| ||||||||||||||||||||||| |||||||||| ||||| |||| |||||||||||| ||||    
T  32946819 cagtgccacgtggcagttaacagccatgtcagcatgttggatggaggaaattaacagaggggggtatttgactgacgtttgacaatttcaagggg 32946725  T

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Target: chr2; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 7 - 76
Target Start/End: Original strand, 21629668 - 21629737
Alignment:
Q  7 aggcgatgatcggttggattgcaataccactgcttcaggtggctggcatcaagacatgtcctattctcaa 76  Q
    |||||||||||||||||||| ||||||| ||||||||||||||  |||||||||||||||||||||||||    
T  21629668 aggcgatgatcggttggattacaataccgctgcttcaggtggcatgcatcaagacatgtcctattctcaa 21629737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 122 - 227
Target Start/End: Original strand, 36657566 - 36657671
Alignment:
Q  122 catgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgcttgacaatttcaggg 221  Q
    |||||| ||||||||||||||||||||| |||   ||| |||||||||||||||||| ||||||||| ||||| ||||| |||| |||| |||||||||     
T  36657566 catgtggcagtgccacgtggcagttaacagccctgtcagcatgttggatggaggaaaataacggaggagggtatttgactgacgtttgataatttcagga 36657665  T
Q  222 gggttt 227  Q
    ||||||    
T  36657666 gggttt 36657671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 99 - 167
Target Start/End: Complemental strand, 39619239 - 39619170
Alignment:
Q  99 tgacttgacatgacttttctgaccatgtgtcagtgccacgtgg-cagttaacggccacatcaacatgttg 167  Q
    |||| |||||||| ||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  39619239 tgacgtgacatgatttttctggccatgtggcagtgccacgtgggcagttaacggccacatcaacatgttg 39619170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 107 - 216
Target Start/End: Complemental strand, 10175678 - 10175569
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtgg-cagttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacg 205  Q
    |||||||||||| |||||||| ||||| ||| ||| || ||||| ||||| ||| |||||| ||||||||||||||||  | ||||||| ||||||||||    
T  10175678 catgacttttctaaccatgtggcagtgtcacatgggcatttaacagccacgtcagcatgttagatggaggaaattaac-aaagggggtatttgacagacg 10175580  T
Q  206 cttgacaattt 216  Q
     |||| |||||    
T  10175579 tttgagaattt 10175569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 218
Target Start/End: Original strand, 17600631 - 17600742
Alignment:
Q  110 gacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggag---gaaattaacggaggggggtaattgacagacgc 206  Q
    ||||||| ||| |||||| || || ||||| |||||||||  |||  ||| ||||||||||||||   ||||||||| |||||||||| ||||| ||||     
T  17600631 gacttttttgatcatgtggcaatgtcacgtagcagttaacaaccatgtcaccatgttggatggaggaggaaattaacagaggggggtatttgactgacgt 17600730  T
Q  207 ttgacaatttca 218  Q
    ||||||||||||    
T  17600731 ttgacaatttca 17600742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 39619240 - 39619280
Alignment:
Q  185 gaggggggtaattgacagacgcttgacaatttcaggggggt 225  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  39619240 gaggggggtaattgacaaacgcttgacaatttcaggggggt 39619280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 186
Target Start/End: Original strand, 32947713 - 32947792
Alignment:
Q  107 catgacttttctgaccatgtgtcagtgccacgtggcagttaacggccacatcaacatgttggatggaggaaattaacgga 186  Q
    |||||||||| ||| |||||| ||||||||||||||||||||| | ||  | |  ||||| |||||||||||||||||||    
T  32947713 catgacttttttgatcatgtggcagtgccacgtggcagttaacagtcatgttagtatgttcgatggaggaaattaacgga 32947792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 219
Target Start/End: Original strand, 39259195 - 39259269
Alignment:
Q  144 gttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgacagacgcttgacaatttcag 219  Q
    ||||||| |||  ||| |||||||||||||||||||||||||| ||||||| ||||| |||| |||| ||||||||    
T  39259195 gttaacgaccatgtcagcatgttggatggaggaaattaacgga-gggggtatttgactgacgtttgataatttcag 39259269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 186 - 224
Target Start/End: Original strand, 39619273 - 39619311
Alignment:
Q  186 aggggggtaattgacagacgcttgacaatttcagggggg 224  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  39619273 aggggggtaattgacaaacgcttgacaatttcagggggg 39619311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 220
Target Start/End: Original strand, 45228705 - 45228823
Alignment:
Q  108 atgacttttctgaccatgtgtcagtgccacgtggca-------gttaacggccacatcaacatgttggatggaggaaattaacggaggggggtaattgac 200  Q
    |||||||||||||||||||| |||||||||||| ||       |||||||  ||||| | |||||| ||||||||||||||| |||  ||||||||  |     
T  45228705 atgacttttctgaccatgtggcagtgccacgtgacacgtgacagttaacgatcacataagcatgttagatggaggaaattaatgga-cggggtaatcaag 45228803  T
Q  201 agacgcttgacaatttcagg 220  Q
    ||| ||||||||||||||||    
T  45228804 agaagcttgacaatttcagg 45228823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 39257582 - 39257534
Alignment:
Q  138 gtggcagttaacggccacatcaacatgttggatggaggaaattaacgga 186  Q
    |||||||||||| | ||  ||| ||||||||||||||||||||||||||    
T  39257582 gtggcagttaacagtcatgtcagcatgttggatggaggaaattaacgga 39257534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 33160 - 33206
Alignment:
Q  181 aacggaggggggtaattgacagacgcttgacaatttcaggggggttt 227  Q
    ||||||||||||||||||||  ||| |||||||||||||||||||||    
T  33160 aacggaggggggtaattgactaacgtttgacaatttcaggggggttt 33206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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