View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17676_low_35 (Length: 209)
Name: NF17676_low_35
Description: NF17676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17676_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 163; Significance: 3e-87; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 16 - 193
Target Start/End: Original strand, 1368624 - 1368802
Alignment:
| Q |
16 |
aaataggacactctagtgaacagaaaacatcacaacagaagttataacaatcttcttccatatacatcctttt-tacttgtgttctaaatggcaacaata |
114 |
Q |
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| T |
1368624 |
aaataggacactctagtgaacacaaaacatcacaacagaagttataacaatcttcttccatatacatccttttttacttgtgttctaaatggcaacaata |
1368723 |
T |
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| Q |
115 |
ccatatatggatattctgagttatatacttatcttcttgttaatattcattgttacacaagttttttactcattatttg |
193 |
Q |
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| T |
1368724 |
ccatatatgaatattctgagttatatacttatcttcttgttaatattcattgttacacaagttttttactcattatttg |
1368802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 45 - 193
Target Start/End: Complemental strand, 1408290 - 1408140
Alignment:
| Q |
45 |
tcacaacagaagttataacaatcttcttccatatacatccttttt--acttgtgttctaaatggcaacaataccatatatggatattctgagttatatac |
142 |
Q |
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| T |
1408290 |
tcacaacagaagatataataatcttcttccatatacatcctttttttacttgtgttctaaatggcaacaataccatatatggatattctgagttatatac |
1408191 |
T |
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| Q |
143 |
ttatcttcttgttaatattcattgttacacaagttttttactcattatttg |
193 |
Q |
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| T |
1408190 |
ttatcttcttgttaatattcattgttacacaagttttttactcattatttg |
1408140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 15 - 193
Target Start/End: Original strand, 1363104 - 1363284
Alignment:
| Q |
15 |
aaaataggacactctagtgaacagaaaacatcacaacagaagtt---ataacaatcttcttccatatacatcctttt-tacttgtgttctaaatggcaac |
110 |
Q |
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| T |
1363104 |
aaaataggacactctagtgaacccaaagcatcacagcagaagttttaataataatcttctt--atatacatccttttttacttgtgttctaaatggcaac |
1363201 |
T |
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| Q |
111 |
aataccatatatggatattctgagttatatacttatcttcttgttaatattcattgttacacaagttttttactcattatttg |
193 |
Q |
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| T |
1363202 |
aataccatatatggattttctgagttatatacttatgttcttgttaatattcattgttacacaagttttttactcattatttg |
1363284 |
T |
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