View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17676_low_4 (Length: 579)

Name: NF17676_low_4
Description: NF17676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17676_low_4
NF17676_low_4
[»] chr5 (6 HSPs)
chr5 (17-344)||(40547310-40547637)
chr5 (348-538)||(40547679-40547869)
chr5 (540-569)||(26639035-26639064)
chr5 (541-569)||(18695279-18695307)
chr5 (533-569)||(23765411-23765447)
chr5 (533-569)||(23815259-23815295)
[»] chr7 (4 HSPs)
chr7 (533-569)||(42271609-42271645)
chr7 (531-569)||(20636895-20636933)
chr7 (540-569)||(27869194-27869223)
chr7 (540-568)||(8527072-8527100)
[»] scaffold0062 (2 HSPs)
scaffold0062 (532-569)||(49935-49972)
scaffold0062 (532-569)||(62474-62511)
[»] chr2 (2 HSPs)
chr2 (532-569)||(15701023-15701060)
chr2 (541-569)||(30714274-30714302)
[»] chr1 (2 HSPs)
chr1 (540-569)||(4059520-4059549)
chr1 (541-569)||(46432215-46432243)
[»] chr6 (1 HSPs)
chr6 (541-569)||(35102490-35102518)
[»] chr4 (1 HSPs)
chr4 (541-569)||(13826419-13826447)
[»] chr3 (2 HSPs)
chr3 (541-569)||(25179852-25179880)
chr3 (541-569)||(28173728-28173756)


Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 17 - 344
Target Start/End: Original strand, 40547310 - 40547637
Alignment:
Q  17 acagagacaggttcaattgttttccatatgtgataatgtttttgttaaccatgttatggatgtatgatagtcagatcatgaatgtgaatatggcttatga 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40547310 acagagacaggttcaattgttttccatatgtgataatgtttttgttaaccatgttatggatgtatgatagtcagatcatgaatgtgaatatggcttatga 40547409  T
Q  117 tataagagggttggtataacattgtaattgtatgaaaagaaatttagttaaactaaacgattactgtttgtattttcatttggtttaaattttgtatgct 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40547410 tataagagggttggtataacattgtaattgtatgaaaagaaatttagttaaactaaacgattactgtttgtattttcatttggtttaaattttgtatgct 40547509  T
Q  217 gtgaaggaaattcatttgtccatataacaatgttaatgctacttctctcaataccttttttgtctagttcctcattaaaggattttagtccaacaaagaa 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  40547510 gtgaaggaaattcatttgtccatataacaatgttaatgctacttctctcaataccttttttgtttagttcctcattaaaggattttagtccaataaagaa 40547609  T
Q  317 aaataaacaattaatggagaatatcaat 344  Q
    ||||||||||||||||||||||||||||    
T  40547610 aaataaacaattaatggagaatatcaat 40547637  T

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Target: chr5; HSP #2
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 348 - 538
Target Start/End: Original strand, 40547679 - 40547869
Alignment:
Q  348 aattgccttgatctccttacctcaacagacacaannnnnnnncatatatcaatcaattttgggcggcgaaagaatcatggatcaaactctttgttgttta 447  Q
    ||||||||||||||||||||||||||| ||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40547679 aattgccttgatctccttacctcaacaaacacaattttttt-catatatcaatcaattttgggcggcgaaagaatcatggatcaaactctttgttgttta 40547777  T
Q  448 gcagtctttcgttggacctcaaatcggaataggtatgaagggtgaaatattcttt-aaaaaatggcaaagactggtttagtttgattaaaaa 538  Q
    |  |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  40547778 gtggtctttcgttggacctcaaatcggaataggtatgaagggtgaaatattctttaaaaaaatggcaaagactggtttagtttgattaaaaa 40547869  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 540 - 569
Target Start/End: Original strand, 26639035 - 26639064
Alignment:
Q  540 aaggctaaagtgcacttttcgccccctatg 569  Q
    ||||||||||||||||||||||||||||||    
T  26639035 aaggctaaagtgcacttttcgccccctatg 26639064  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 541 - 569
Target Start/End: Complemental strand, 18695307 - 18695279
Alignment:
Q  541 aggctaaagtgcacttttcgccccctatg 569  Q
    |||||||||||||||||||||||||||||    
T  18695307 aggctaaagtgcacttttcgccccctatg 18695279  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 533 - 569
Target Start/End: Original strand, 23765411 - 23765447
Alignment:
Q  533 taaaaagaaggctaaagtgcacttttcgccccctatg 569  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  23765411 taaaaagtaggctaaactgcacttttcgccccctatg 23765447  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 533 - 569
Target Start/End: Original strand, 23815259 - 23815295
Alignment:
Q  533 taaaaagaaggctaaagtgcacttttcgccccctatg 569  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  23815259 taaaaagtaggctaaactgcacttttcgccccctatg 23815295  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 533 - 569
Target Start/End: Complemental strand, 42271645 - 42271609
Alignment:
Q  533 taaaaagaaggctaaagtgcacttttcgccccctatg 569  Q
    |||||||||||||||||||||||||||||||||||||    
T  42271645 taaaaagaaggctaaagtgcacttttcgccccctatg 42271609  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 531 - 569
Target Start/End: Complemental strand, 20636933 - 20636895
Alignment:
Q  531 attaaaaagaaggctaaagtgcacttttcgccccctatg 569  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  20636933 attaaaataaaggctaaagtgcacttttcgccccctatg 20636895  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 540 - 569
Target Start/End: Original strand, 27869194 - 27869223
Alignment:
Q  540 aaggctaaagtgcacttttcgccccctatg 569  Q
    ||||||||||||||||||||||||||||||    
T  27869194 aaggctaaagtgcacttttcgccccctatg 27869223  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 540 - 568
Target Start/End: Complemental strand, 8527100 - 8527072
Alignment:
Q  540 aaggctaaagtgcacttttcgccccctat 568  Q
    |||||||||||||||||||||||||||||    
T  8527100 aaggctaaagtgcacttttcgccccctat 8527072  T

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Target: scaffold0062 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 532 - 569
Target Start/End: Complemental strand, 49972 - 49935
Alignment:
Q  532 ttaaaaagaaggctaaagtgcacttttcgccccctatg 569  Q
    |||||||  |||||||||||||||||||||||||||||    
T  49972 ttaaaaattaggctaaagtgcacttttcgccccctatg 49935  T

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Target: scaffold0062; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 532 - 569
Target Start/End: Complemental strand, 62511 - 62474
Alignment:
Q  532 ttaaaaagaaggctaaagtgcacttttcgccccctatg 569  Q
    |||||||  |||||||||||||||||||||||||||||    
T  62511 ttaaaaattaggctaaagtgcacttttcgccccctatg 62474  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 532 - 569
Target Start/End: Complemental strand, 15701060 - 15701023
Alignment:
Q  532 ttaaaaagaaggctaaagtgcacttttcgccccctatg 569  Q
    |||||||  |||||||||||||||||||||||||||||    
T  15701060 ttaaaaattaggctaaagtgcacttttcgccccctatg 15701023  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 541 - 569
Target Start/End: Original strand, 30714274 - 30714302
Alignment:
Q  541 aggctaaagtgcacttttcgccccctatg 569  Q
    |||||||||||||||||||||||||||||    
T  30714274 aggctaaagtgcacttttcgccccctatg 30714302  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 540 - 569
Target Start/End: Original strand, 4059520 - 4059549
Alignment:
Q  540 aaggctaaagtgcacttttcgccccctatg 569  Q
    ||||||||||||||||||||||||||||||    
T  4059520 aaggctaaagtgcacttttcgccccctatg 4059549  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 541 - 569
Target Start/End: Original strand, 46432215 - 46432243
Alignment:
Q  541 aggctaaagtgcacttttcgccccctatg 569  Q
    |||||||||||||||||||||||||||||    
T  46432215 aggctaaagtgcacttttcgccccctatg 46432243  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 541 - 569
Target Start/End: Original strand, 35102490 - 35102518
Alignment:
Q  541 aggctaaagtgcacttttcgccccctatg 569  Q
    |||||||||||||||||||||||||||||    
T  35102490 aggctaaagtgcacttttcgccccctatg 35102518  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 541 - 569
Target Start/End: Original strand, 13826419 - 13826447
Alignment:
Q  541 aggctaaagtgcacttttcgccccctatg 569  Q
    |||||||||||||||||||||||||||||    
T  13826419 aggctaaagtgcacttttcgccccctatg 13826447  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 541 - 569
Target Start/End: Complemental strand, 25179880 - 25179852
Alignment:
Q  541 aggctaaagtgcacttttcgccccctatg 569  Q
    |||||||||||||||||||||||||||||    
T  25179880 aggctaaagtgcacttttcgccccctatg 25179852  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 541 - 569
Target Start/End: Original strand, 28173728 - 28173756
Alignment:
Q  541 aggctaaagtgcacttttcgccccctatg 569  Q
    |||||||||||||||||||||||||||||    
T  28173728 aggctaaagtgcacttttcgccccctatg 28173756  T

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