View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17676_low_6 (Length: 468)
Name: NF17676_low_6
Description: NF17676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17676_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 415; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 1 - 458
Target Start/End: Original strand, 46229074 - 46229535
Alignment:
| Q |
1 |
ggaacgaccctgtgtttagtaaatatagtttttgaattaactgataaatatgaaa-tgatataaaaagatgagt--tcaaataatatttattgtttttca |
97 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||| |
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| T |
46229074 |
ggaacgaccctgtgtttagtaaatatagtttttgaattaactgataaatatgaaaatgatataaaaagatgtgtgttcaaataatatttattgtttttca |
46229173 |
T |
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| Q |
98 |
attataagatataaacggtaagtgagctgctataaactcggaaactaattttgcatgcagtggtgctatatctccggataaaacttctcacgaactcatc |
197 |
Q |
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| T |
46229174 |
attataagatataaacggtaagtgagctgctataaactcggaaactaattttgcatgcagtggtgctatatctccggataaaacttctcacgaactcata |
46229273 |
T |
|
| Q |
198 |
acgacagcaaaacatcagtggtaacaaaaattaaggaattggttttttagtgggtcgtgaagcactcgtgaagtttattgtcgctataacaagcattttc |
297 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46229274 |
acgatagcaaaacatcagtggtaacaaaaattaaggaattggttttttagtggttcgtgaagcactcgtgaagtttattgtcgctataacaagcattttc |
46229373 |
T |
|
| Q |
298 |
caattgcatcatctccttcactctcctctacatctttctcc-ttactttcacctaatagttgaagtttttgggatacaattgattcctatatatgaaaca |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
46229374 |
caattgcatcatctccttcactctcctctacatctttctcctttactttcacctaatagttgaagtttttgggatacaattgattcctatatatgtaaca |
46229473 |
T |
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| Q |
397 |
tgaaatctgagctagccttcaagccacatatttatgcaacttggttttcattgtggcctatg |
458 |
Q |
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| T |
46229474 |
tgaaatctgagctagccttcaagccacatatttatgcaacttggttttcattgtggcctatg |
46229535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 240 - 298
Target Start/End: Complemental strand, 46228771 - 46228713
Alignment:
| Q |
240 |
ttttttagtgggtcgtgaagcactcgtgaagtttattgtcgctataacaagcattttcc |
298 |
Q |
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|||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||| |
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| T |
46228771 |
ttttttagtgggtcgtgaagcattcgtgaagtttattgtcgttgtaacaagcattttcc |
46228713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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