View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17676_low_7 (Length: 462)
Name: NF17676_low_7
Description: NF17676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17676_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 4 - 445
Target Start/End: Complemental strand, 55878853 - 55878405
Alignment:
| Q |
4 |
agtgcttgatgattaatttgaaattaaaaagaaaagaaatctctcaagctataaactataatcaccttaagtcatagcagtactcaaatggaagataatc |
103 |
Q |
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| T |
55878853 |
agtgcttgatgattaatttgaaattaaaaagaaaagaaatctctcaagctataaactattataaccttatgtcatagcagtactcaaagggaagatcatc |
55878754 |
T |
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| Q |
104 |
agaattagaaaatgaatgcctttgttt---catttattctatgacattccatgcatcatcaacataaattggttttcaatgaatcaatgaacatatttac |
200 |
Q |
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| T |
55878753 |
agaatcagaaaacgaatgccttttttttttcatttattctatgacattccatgcatcagcaacataaattcgttttcaatgaatcaatgaacatatgtac |
55878654 |
T |
|
| Q |
201 |
gctagtgaaagacggaatttttcacaaaattgtgaatatatcataattgaaatccattcttcattgaaagtgggtaatgagaagtgtaaaacagaaaaaa |
300 |
Q |
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| T |
55878653 |
gctagtgaaagacagaatttttcacaaaactgccaatatatcataattgaaatctagtcttcattgaaagtgggtaatgagaaatgtaaaacagaaccaa |
55878554 |
T |
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| Q |
301 |
caaatcaattaagaagattgcatcaatgtataattaaaatagcagagcaaatcggttgagacacattgcataccttaattctcatctctcaactctttct |
400 |
Q |
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| T |
55878553 |
caaatcaattaagaagattgcatcaatgtataattaaaatagcaaatcaaatcagttgtgacacattgcataccttaattctcatctttaatctctttct |
55878454 |
T |
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| Q |
401 |
tggccatat----cggcgtgggtggtgggcggccaatctgccaattgtg |
445 |
Q |
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| T |
55878453 |
cagccatgtattgcggtgtgggtggtgcgcggccaagctgccagttgtg |
55878405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 242 - 361
Target Start/End: Original strand, 46622955 - 46623074
Alignment:
| Q |
242 |
cataattgaaatccattcttcattgaaagtgggtaatgagaagtgtaaaacagaaaaaacaaatcaattaagaagattgcatcaatgtataattaaaata |
341 |
Q |
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| T |
46622955 |
cataattgaaatctagtcttcattggaagtgggtaatgagatgagtcaaacagaaacaacgaatcaattaagaagattgtgtcaacatacgattaaaata |
46623054 |
T |
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| Q |
342 |
gcagagcaaatcggttgaga |
361 |
Q |
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| T |
46623055 |
gcagagcaaatcagttgaga |
46623074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 13 - 128
Target Start/End: Original strand, 9062512 - 9062627
Alignment:
| Q |
13 |
tgattaatttgaaattaaaaagaaaagaaatctctcaagctataaactataatcaccttaagtcatagcagtactcaaatggaagataatcagaattaga |
112 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
9062512 |
tgattaatttgaaattaaaaagaaaagaaatctttcaagctataaactataatcaccttaagtcatagcagtactcaaagggaagatcatcagaattaga |
9062611 |
T |
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| Q |
113 |
aaatgaatgcctttgt |
128 |
Q |
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|||||||||||||||| |
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| T |
9062612 |
aaatgaatgcctttgt |
9062627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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