View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17677_high_5 (Length: 509)
Name: NF17677_high_5
Description: NF17677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17677_high_5 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 172 - 509
Target Start/End: Original strand, 10336542 - 10336881
Alignment:
| Q |
172 |
cctatcaaatagtttattggttagaaattcatatttttaaagtgaataagtgtcgcggtttgaactctggcagtctatattgtgcaaaccttcctaagct |
271 |
Q |
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| T |
10336542 |
cctatcaaatagtttattggttagaaattcatatttttatagtgaataagtgtcgcggtttgaactctggcaatatatattatgcaaaccttcctaagct |
10336641 |
T |
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| Q |
272 |
aagctgacggccggttggtgaacattttccaatagttctttgtttagtagcnnnnnnn---ctctatctttttaatgggattaaatatcattnnnnnnnn |
368 |
Q |
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| T |
10336642 |
aagctgacggccggttggtgaacattttccaatagttctttgtttagtagcttttttttttctctatctttttaatgggattaaatatcattaaaaaaaa |
10336741 |
T |
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| Q |
369 |
nttatctattaaataaaatgaattatgattttatatgtgaaatatttttcttgtagggcatgaggaagaagtaattagggacatggtgataagcttcatt |
468 |
Q |
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| T |
10336742 |
-ttatctattaaataaaatgaattatgattttatatgtgaaatatttttcttgtagggcatgaggaagaagtaattagggacatggtgataagcttcatt |
10336840 |
T |
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| Q |
469 |
atggcagggagggacacaacatcatcagcattgacatggtt |
509 |
Q |
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| T |
10336841 |
atggcagggagggacacaacatcatcagcattaacatggtt |
10336881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 2 - 161
Target Start/End: Original strand, 10335951 - 10336110
Alignment:
| Q |
2 |
ggatcagagaggaggcttagagatgcagttaaggaggttaagatacttgtcatggaaatgattttagaaaggaagaagaagatgaatgtaaaaggagagg |
101 |
Q |
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| T |
10335951 |
ggatcggaaaggaggcttagagatgcagttaaggaggttaagatacttgtcatggaaatgattttagaaaggaagaagatgatgaatgtaaaaggagagg |
10336050 |
T |
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| Q |
102 |
agcttgttggtggtcaagatctcttgtcacgtcttatttcttcaggttggtgaacattaa |
161 |
Q |
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| T |
10336051 |
agcttgttggtggtcaagatctcttgtcacgtcttatttcttcaggttggtgaacattaa |
10336110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 176 - 223
Target Start/End: Original strand, 19208853 - 19208900
Alignment:
| Q |
176 |
tcaaatagtttattggttagaaattcatatttttaaagtgaataagtg |
223 |
Q |
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| T |
19208853 |
tcaaatggtttagtggttagaaattcacatttttaaagtgaataagtg |
19208900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 181 - 223
Target Start/End: Original strand, 37318519 - 37318561
Alignment:
| Q |
181 |
tagtttattggttagaaattcatatttttaaagtgaataagtg |
223 |
Q |
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| T |
37318519 |
tagtttgttggttaaaaattcatttttttaaagtgaataagtg |
37318561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 2710548 - 2710584
Alignment:
| Q |
184 |
tttattggttagaaattcatatttttaaagtgaataa |
220 |
Q |
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| T |
2710548 |
tttagtggttagaaattcatttttttaaagtgaataa |
2710584 |
T |
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