View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17677_low_10 (Length: 327)
Name: NF17677_low_10
Description: NF17677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17677_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 5 - 174
Target Start/End: Original strand, 49598929 - 49599098
Alignment:
| Q |
5 |
ttccccttggtaacatgagtcaattttttctgtaaaaattaaaaagcataatataaattagacaattgtgaagtatgaatcattgagttgtattggcttt |
104 |
Q |
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| T |
49598929 |
ttccccttggtaacatgagtcaattttttctgtaaaaattaaaaagcataatataaattagacaattgtgaagtatgaatcattgagttgtattggcttt |
49599028 |
T |
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| Q |
105 |
ggaattggaataatattgttgaaaagagataaccttattgtttttctttttggaagaggcggtgacaatt |
174 |
Q |
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| T |
49599029 |
ggaattggaataatattgttgaaaagagataaccttattgtttttctttttggaagaggcggtgacaatt |
49599098 |
T |
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Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 228 - 317
Target Start/End: Original strand, 49599152 - 49599241
Alignment:
| Q |
228 |
ttttcgctgcaaaggagaggattgggttcctctgactgtgacgaaacgggtatatgataaacactggttcgcgacggccatttttctctg |
317 |
Q |
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| T |
49599152 |
ttttcgctgcaaaggagaggattgggttcctctgactgtgacgaaacgggtatatgataaacactggttcgcgacggccatttttctctg |
49599241 |
T |
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