View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17677_low_13 (Length: 261)
Name: NF17677_low_13
Description: NF17677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17677_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 16 - 249
Target Start/End: Complemental strand, 22138176 - 22137943
Alignment:
| Q |
16 |
gttgatcctatcaagagaacagaaagatcaaatcttaagttctggactagtcctacttttactttaggtggggcacttattattctcatagttcttttgt |
115 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22138176 |
gttgatcctatcaagagaacagaaagatcaaaccttaagttctggactagtcctacttttactttaggtggggcacttattattctcatagttcttttgt |
22138077 |
T |
|
| Q |
116 |
tgtacacccttcaagcaccaatcaacaagtaatttaactatagaatttggaagtgtgaaagtatttgtctcacacaaaatgcatattattgtaattgatg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
22138076 |
tgtacacccttcaagcaccaatcaacaagtaatttaactatagaatttggaagtgtcaaagtatttgtctcatacaaaatgcatattattgtaattgatg |
22137977 |
T |
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| Q |
216 |
gcttctcctgtttctattcctgttctattgcttc |
249 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
22137976 |
gcttctcctgtttctattcctgttctattgcttc |
22137943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 16 - 249
Target Start/End: Complemental strand, 40505685 - 40505452
Alignment:
| Q |
16 |
gttgatcctatcaagagaacagaaagatcaaatcttaagttctggactagtcctacttttactttaggtggggcacttattattctcatagttcttttgt |
115 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40505685 |
gttgatcctatcaagagaacagaaagatcaaaccttaagttctggactagtcctacttttactttaggtggggcacttattattctcatagttcttttgt |
40505586 |
T |
|
| Q |
116 |
tgtacacccttcaagcaccaatcaacaagtaatttaactatagaatttggaagtgtgaaagtatttgtctcacacaaaatgcatattattgtaattgatg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
40505585 |
tgtacacccttcaagcaccaatcaacaagtaatttaactatagaatttggaagtgtcaaagtatttgtctcatacaaaatgcatattattgtaattgatg |
40505486 |
T |
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| Q |
216 |
gcttctcctgtttctattcctgttctattgcttc |
249 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
40505485 |
gcttctcctgtttctattcctgttctattgcttc |
40505452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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