View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17677_low_2 (Length: 597)
Name: NF17677_low_2
Description: NF17677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17677_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 9 - 581
Target Start/End: Original strand, 25811217 - 25811789
Alignment:
| Q |
9 |
agcaaagggactgatcaaagattggatttcacttcttgttattctcttcttttaggcaggattggtataggaagcaaacttgtgcaacaagttctgaact |
108 |
Q |
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|||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||| |
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| T |
25811217 |
agcaaagggactgatcaaagcttggatttcacttcttgttcttctcttcttttaggcaggattggtatgggtagcaaacttgtgcagcaagttctgaact |
25811316 |
T |
|
| Q |
109 |
cttctatcatacacttaatatgggctatttggattgaaagaaataatagatatttccatgacaagcatcaatctatgtcttccatcttcaattctatgct |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
25811317 |
cttctatcatacacttaatatgggctatttggattgaaagaaataatagatatttccatgacaagcatcaatctatgtcttccatctttaattctatgct |
25811416 |
T |
|
| Q |
209 |
tgctgaagtgaagctctgttttagattaagcttggtccatggtgcttcagctatgcaggatcacaagattgctcaaatgtttaacattcccctcaagatt |
308 |
Q |
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|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||| ||| |
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| T |
25811417 |
tgctgaagtgaaacttagttttagattaagcttggtccatggtgcttcagctatgcaggatcacaagatagctcagctatttaacattcccctcaaaatt |
25811516 |
T |
|
| Q |
309 |
aagagaatcagtcaggttcatgatattgtttggtgtcctccctcttatgatactgttaagtttaattgtgatggatcatccgttggggttcatccttgtg |
408 |
Q |
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||||||||||| |||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
25811517 |
aagagaatcagacaggttcaagatattgtctggtgtcctccctcatatgatactgttaagtttaattgtgatggctcatcagttggggttcatccttgtg |
25811616 |
T |
|
| Q |
409 |
gggccgttggtattgttattagagattccaattttgcattcttgggagctatatctagtaacattggtcttgcctcttccattgaagctgagttctgtgc |
508 |
Q |
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| T |
25811617 |
ggggcattggtattgttattagagattccaattttgcattcttgggagctatatctagtaacattggtcatgcttcatccattgaagctgagttcagtgc |
25811716 |
T |
|
| Q |
509 |
ctgcatgcttgcttgtgagaaggctatggagatgggtttgagcagcatctgtttggagtctgattctgtcaaa |
581 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
25811717 |
ctgcatgcttgcttttgagaaggctatggagatgggtttgagcagcatctgtttggagtttgattctatcaaa |
25811789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 9 - 581
Target Start/End: Original strand, 12403278 - 12403850
Alignment:
| Q |
9 |
agcaaagggactgatcaaagattggatttcacttcttgttattctcttcttttaggcaggattggtataggaagcaaacttgtgcaacaagttctgaact |
108 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||| |
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| T |
12403278 |
agcaaagggactgatcaaagcttggatttcacttcttgttcttctcttcttttaggcaggattggtatgggtagcaaacttgtgcagcaagttctgaact |
12403377 |
T |
|
| Q |
109 |
cttctatcatacacttaatatgggctatttggattgaaagaaataatagatatttccatgacaagcatcaatctatgtcttccatcttcaattctatgct |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
12403378 |
cttctatcatacacttaatatgggctatttggattgaaagaaataatagatatttccatgacaagcatcaatctatgtcttccatctttaattctatgct |
12403477 |
T |
|
| Q |
209 |
tgctgaagtgaagctctgttttagattaagcttggtccatggtgcttcagctatgcaggatcacaagattgctcaaatgtttaacattcccctcaagatt |
308 |
Q |
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|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||| ||| |
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| T |
12403478 |
tgctgaagtgaaacttagttttagattaagcttggtccatggtgcttcagctatgcaggatcacaagatagctcagctatttaacattcccctcaaaatt |
12403577 |
T |
|
| Q |
309 |
aagagaatcagtcaggttcatgatattgtttggtgtcctccctcttatgatactgttaagtttaattgtgatggatcatccgttggggttcatccttgtg |
408 |
Q |
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||||||||||| |||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
12403578 |
aagagaatcagacaggttcaagatattgtctggtgtcctccctcatatgatactgttaagtttaattgtgatggctcatcagttggggttcatccttgtg |
12403677 |
T |
|
| Q |
409 |
gggccgttggtattgttattagagattccaattttgcattcttgggagctatatctagtaacattggtcttgcctcttccattgaagctgagttctgtgc |
508 |
Q |
| |
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||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||| |||| |
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| T |
12403678 |
ggggcattggtattgttattagagattccaattttgcattcttgggagctatatctagtaacattggtcatgcttcatccattgaagctgagttcagtgc |
12403777 |
T |
|
| Q |
509 |
ctgcatgcttgcttgtgagaaggctatggagatgggtttgagcagcatctgtttggagtctgattctgtcaaa |
581 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
12403778 |
ctgcatgcttgcttttgagaaggctatggagatgggtttgagcagcatctgtttggagtttgattctatcaaa |
12403850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 493
Target Start/End: Complemental strand, 28734691 - 28734562
Alignment:
| Q |
364 |
ttaagtttaattgtgatggatcatccgttggggttcatccttgtggggccgttggtattgttattagagattccaattttgcattcttgggagctatatc |
463 |
Q |
| |
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||||||| |||||||||| ||| || | |||| ||| |||||||||||| |||||||||| || ||||| ||||| | | ||||| |||||||| || |
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| T |
28734691 |
ttaagttcaattgtgatgaatcttctataggggctcacccttgtggggccattggtattgtgatcagagactccaactcagtcttcttaggagctatctc |
28734592 |
T |
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| Q |
464 |
tagtaacattggtcttgcctcttccattga |
493 |
Q |
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|| |||||||| ||||||| ||||||| |
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| T |
28734591 |
cagcaacattggatatgcctctcccattga |
28734562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 78 - 166
Target Start/End: Complemental strand, 28734975 - 28734887
Alignment:
| Q |
78 |
ggaagcaaacttgtgcaacaagttctgaactcttctatcatacacttaatatgggctatttggattgaaagaaataatagatatttcca |
166 |
Q |
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||||||||||| ||||| || ||| |||||||| | || |||||| |||| | || ||||||||||||||| || | ||||||||||| |
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| T |
28734975 |
ggaagcaaactggtgcagcaggttatgaactctgccataatacacctaatttaggttatttggattgaaaggaaccagagatatttcca |
28734887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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