View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17677_low_3 (Length: 547)
Name: NF17677_low_3
Description: NF17677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17677_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 476; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 9 - 531
Target Start/End: Complemental strand, 5863632 - 5863110
Alignment:
| Q |
9 |
aaaatatcaaaacattggccacaataggcattaacatgagttttaaggccacaccagtaacaccacgtagcccctaaatggaagtttcatgtgannnnnn |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5863632 |
aaaatatcaaaacattggccacaataggcattaacatgagttttaaggccacaccagtaacaccacgtagcccctaaatggaagtttcatgtgatttttt |
5863533 |
T |
|
| Q |
109 |
nnnagggatatattattgcattaaatttactggaccaaccatccagagcataggtggttatttttcagcctcatgaaagatcatgaacaagatgaaaggc |
208 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5863532 |
tttagggatttattattgcattaaatttactggaccaaccatccagagcataggtggttatttttcagcctcatgaaagatcatgaacaagatgaaaggc |
5863433 |
T |
|
| Q |
209 |
tgaggccaattgtgcagtgtagataaattacatttttctttaggttttgttttgtttcctcttatcacctcatacactgcatacgaacatatctaaatag |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
5863432 |
tgaggccaattgtgcagtgtagataaattacatttttcttcaggttttgttttgtttcctcttatcacctcatacactgcataagaacatatctaaatag |
5863333 |
T |
|
| Q |
309 |
gaattcaaaatatggatcatacaaacaaatgactaagtgcatctttgatattgtggtggatgtgttataatcataacaattcaacgtgaattttcaaaat |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5863332 |
gaattcaaaatatggatcatacaaacaaatgactaagtgcatctttgatattgtggtggatgtgttataatcataacaattcaacgtgaattttcaaaat |
5863233 |
T |
|
| Q |
409 |
ctacacttgtaacattttcaaaattacaacgactagttgtgattctaacaaactaactctgctaccaaatatgcatctgtctttattgtttaactcgatt |
508 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5863232 |
ctacacttgtaacattttcaaaattacaacgactagtcgtgattctaacaaactaactctgctaccaaatatgcatctgtctttattgtttaactcgatc |
5863133 |
T |
|
| Q |
509 |
ttattttagataacattagtcct |
531 |
Q |
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||||||||||||||||||||||| |
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| T |
5863132 |
ttattttagataacattagtcct |
5863110 |
T |
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