View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17677_low_4 (Length: 511)
Name: NF17677_low_4
Description: NF17677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17677_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 101 - 473
Target Start/End: Complemental strand, 5931460 - 5931087
Alignment:
| Q |
101 |
gaagaaacctgttttgattggagccaaatagttgcaggacagaacaagcatgaatgagcgagtgcagcgaatacgttaccattttcgtatttgaaattgt |
200 |
Q |
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| T |
5931460 |
gaagaaacctgttttgattggagccaaatagttgcaggacagaacaagcatgaatgagcgagtgcagcgaatacgttaccattttcctatttgaaattgt |
5931361 |
T |
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| Q |
201 |
tgtaaggatttgtgcgctggtcttttttgggaataaattcatgtattgatatttgatctaatcattcacatgcatttcttttagtaaaattactcacttt |
300 |
Q |
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| T |
5931360 |
tgtaaggatttgtgcgctggtcttttttgggaataaattcatgtattgatatttgatctaatcattcacatgcattttttttagtaaaattactcacttt |
5931261 |
T |
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| Q |
301 |
attaaaacattattactatgtccaatgtttaatcctactattgatttgctnnnnnnnnnnnnngtttcattttgatcctattcatgaaaagtttgaaaaa |
400 |
Q |
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| T |
5931260 |
attaaaacattattactatgcccaatgtttaatcctactattgatttcctaaaaaaaaaaaaagtttcattttgatcctattcatgaaaagtttaaaaaa |
5931161 |
T |
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| Q |
401 |
agttacaacatggcaacgtagac-aatgacaacgaaggttggttcgattgataaggattaaggagttgactcat |
473 |
Q |
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| T |
5931160 |
agttacaacatggcaatgtagacaaatgacaacgaaggttgattcggttgataaggattaaggagttgactcat |
5931087 |
T |
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