View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17677_low_6 (Length: 375)

Name: NF17677_low_6
Description: NF17677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17677_low_6
NF17677_low_6
[»] chr2 (1 HSPs)
chr2 (18-367)||(39644417-39644765)
[»] chr4 (1 HSPs)
chr4 (61-120)||(22616728-22616787)
[»] chr7 (4 HSPs)
chr7 (60-156)||(22122218-22122314)
chr7 (60-156)||(40512159-40512255)
chr7 (60-120)||(21890802-21890862)
chr7 (60-120)||(46007824-46007884)
[»] chr3 (1 HSPs)
chr3 (60-120)||(41049527-41049587)


Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 18 - 367
Target Start/End: Original strand, 39644417 - 39644765
Alignment:
Q  18 agtgatttgattatagatcattgacttggaattttttaaatacagagcctatgatcgagctgctataaagtttaggggacttgatgcggacattaatttc 117  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  39644417 agtgatttgattatagatcattgacttggaattttttaa-tacagagcctatgatcgagctgctataaagtttaggggacttgatgctgacattaatttc 39644515  T
Q  118 aatctagttgagtatgaggaagatatgaatcaggtttgtaaaccttttgattagcagatgagtgtatacatgaggatttatcgaaatcaaggtgaaccac 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39644516 aatctagttgagtatgaggaagatatgaatcaggtttgtaaaccttttgattagcagatgagtgtatacatgaggatttatcgaaatcaaggtgaaccac 39644615  T
Q  218 tgtgattttgtaaaaactacttagcgtggcctttgcaaattcatggggacttattgtgatttcggcaaatccatagtgacatcaaatatgcacacataga 317  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39644616 tgtgattttgtaaaaactacttagcgtggcctttgcaaattcacggggactcattgtgatttcggcaaatccatagtgacatcaaatatgcacacataga 39644715  T
Q  318 tggattgtatgattgatttttcatagttttaattattattaatgatgatg 367  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39644716 tggattgtatgattgatttttcatagttttaattattattaatgatgatg 39644765  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 120
Target Start/End: Complemental strand, 22616787 - 22616728
Alignment:
Q  61 agagcctatgatcgagctgctataaagtttaggggacttgatgcggacattaatttcaat 120  Q
    ||||||||||||||||||||||| |||||||||||| ||| ||| ||||| |||||||||    
T  22616787 agagcctatgatcgagctgctattaagtttaggggagttggtgctgacataaatttcaat 22616728  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 156
Target Start/End: Complemental strand, 22122314 - 22122218
Alignment:
Q  60 cagagcctatgatcgagctgctataaagtttaggggacttgatgcggacattaatttcaatctagttgagtatgaggaagatatgaatcaggtttgt 156  Q
    |||||| |||||||||||||| ||||||||| | ||  | |||||||| |||||||||||| |   ||| ||||| |||||||| || |||||||||    
T  22122314 cagagcatatgatcgagctgcgataaagtttcgtggcgtggatgcggatattaatttcaatgtcagtgattatgatgaagatataaagcaggtttgt 22122218  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 156
Target Start/End: Original strand, 40512159 - 40512255
Alignment:
Q  60 cagagcctatgatcgagctgctataaagtttaggggacttgatgcggacattaatttcaatctagttgagtatgaggaagatatgaatcaggtttgt 156  Q
    |||||| |||||||||||||| ||||||||| | ||  | |||||||| |||||||||||| |   ||| ||||| |||||||| || |||||||||    
T  40512159 cagagcatatgatcgagctgcgataaagtttcgtggcgtggatgcggatattaatttcaatgtcagtgattatgatgaagatataaagcaggtttgt 40512255  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 21890862 - 21890802
Alignment:
Q  60 cagagcctatgatcgagctgctataaagtttaggggacttgatgcggacattaatttcaat 120  Q
    ||||||||||||||||||||| || || || |||||| ||| ||| ||||| |||||||||    
T  21890862 cagagcctatgatcgagctgcgattaaattcaggggagttggtgctgacataaatttcaat 21890802  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 46007824 - 46007884
Alignment:
Q  60 cagagcctatgatcgagctgctataaagtttaggggacttgatgcggacattaatttcaat 120  Q
    |||||||||||||| |||||| || || ||||||||| ||| ||| ||||| |||||||||    
T  46007824 cagagcctatgatcaagctgcgattaaatttaggggagttggtgctgacataaatttcaat 46007884  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 41049527 - 41049587
Alignment:
Q  60 cagagcctatgatcgagctgctataaagtttaggggacttgatgcggacattaatttcaat 120  Q
    ||||||||||||||||||||| || || || |||||| ||| ||| ||||| |||||||||    
T  41049527 cagagcctatgatcgagctgcgattaaattcaggggagttggtgctgacataaatttcaat 41049587  T

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