View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17677_low_7 (Length: 345)

Name: NF17677_low_7
Description: NF17677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17677_low_7
NF17677_low_7
[»] chr4 (9 HSPs)
chr4 (11-345)||(2383036-2383374)
chr4 (67-244)||(2382025-2382205)
chr4 (114-234)||(2391798-2391919)
chr4 (167-265)||(2546146-2546242)
chr4 (15-59)||(2380684-2380728)
chr4 (11-56)||(2381894-2381939)
chr4 (281-337)||(44352809-44352865)
chr4 (280-319)||(33727999-33728038)
chr4 (283-323)||(55164572-55164612)
[»] chr5 (1 HSPs)
chr5 (281-336)||(6752724-6752779)
[»] chr2 (1 HSPs)
chr2 (281-336)||(39843925-39843980)
[»] chr3 (2 HSPs)
chr3 (281-322)||(50211713-50211754)
chr3 (281-336)||(23091340-23091395)
[»] chr7 (3 HSPs)
chr7 (278-336)||(34151101-34151159)
chr7 (278-336)||(34175965-34176023)
chr7 (283-321)||(45268699-45268737)
[»] chr8 (1 HSPs)
chr8 (281-322)||(174247-174288)
[»] chr6 (1 HSPs)
chr6 (281-322)||(13833357-13833398)


Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 11 - 345
Target Start/End: Original strand, 2383036 - 2383374
Alignment:
Q  11 cacagaggagaagaataacttagatggtaatgatactgcatagtgatagaggtagctaacgggacatttgatgggatgaagaaaattactgaagtctttc 110  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2383036 cacagaggagaagaataacttagatggtaatgatactgcata-tgatagaggtagctaacgggacatttgatgggatgaagaaaattactgaagtctttc 2383134  T
Q  111 agttttggagtatattttttatttacaaaatttgatggttcacttctttatacatgttaagcacttggcatattgcattattattgacattaagaatgag 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2383135 agttttggagtatattttttatttacaaaatttgatggttcacttctttatacatgttaagcacttggcatattgcattattattgacattaagaatgag 2383234  T
Q  211 aatttgggtctcaaccttacttttccggtttcacttctgaacataggcatatttatccaaggttgttaaaacc-----ggaccggccggttcaaccggtt 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||    
T  2383235 aatttgggtctcaaccttacttttccggtttcacttctgaacataggcatatttatccaaggttgttaaaaccggactggaccggccggttcaaccggtt 2383334  T
Q  306 gaacagtgaaccggaccacagaccggtccgattgagcctc 345  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  2383335 gaaccgtgaaccggaccacagaccggtccgattgagcctc 2383374  T

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Target: chr4; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 67 - 244
Target Start/End: Original strand, 2382025 - 2382205
Alignment:
Q  67 taacgggacatttgatgggatgaagaaaattactgaagtctttcagttttggagtatattttt---tatttacaaaatttgatggttcacttctttatac 163  Q
    |||||| |||||||||||||||| ||||||||||||| | ||| || |||||| |||||||||   |||||||||||||||||| ||||||| |||||||    
T  2382025 taacggaacatttgatgggatgatgaaaattactgaaatattttagctttggaatatatttttgtctatttacaaaatttgatgattcacttgtttatac 2382124  T
Q  164 atgttaagcacttggcatattgcattattattgacattaagaatgagaatttgggtctcaaccttacttttccggtttcac 244  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||  ||||||||    
T  2382125 atgttaagcacttggcatattgcattattattgacattaaggatgagaatttgggtctcaaccctacttttggggtttcac 2382205  T

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Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 114 - 234
Target Start/End: Original strand, 2391798 - 2391919
Alignment:
Q  114 tttggagtatattttt----tatttacaaaatttgatggttcacttctttatacatgttaagcacttggcatattgcattattattgacattaagaatga 209  Q
    ||||||||||||||||    |||||||||||||||   |||||||| |||||||||||| ||||||||||||||||||||||||||||  ||||||||||    
T  2391798 tttggagtatatttttgtcttatttacaaaatttg---gttcacttgtttatacatgtttagcacttggcatattgcattattattgaatttaagaatga 2391894  T
Q  210 gaatttgggtctcaaccttactttt 234  Q
    |||||| |||||||||| |||||||    
T  2391895 gaatttcggtctcaaccatactttt 2391919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 167 - 265
Target Start/End: Complemental strand, 2546242 - 2546146
Alignment:
Q  167 ttaagcacttggcatattgcattattattgacattaagaatgagaatttgggtctcaaccttacttttccggtttcacttctgaacataggcatattta 265  Q
    ||||||||||||||||||| ||| || ||||||| ||||| | |||||||| ||||||| ||||||||  ||||||| |||||||||||||||||||||    
T  2546242 ttaagcacttggcatattgtattctttttgacat-aagaaagggaatttggttctcaactttacttttg-ggtttcatttctgaacataggcatattta 2546146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 2380684 - 2380728
Alignment:
Q  15 gaggagaagaataacttagatggtaatgatactgcatagtgatag 59  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  2380684 gaggagaagaataacttagatggtaatgatactgcatagtcatag 2380728  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 2381894 - 2381939
Alignment:
Q  11 cacagaggagaagaataacttagatggtaatgatactgcatagtga 56  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||    
T  2381894 cacagagtagaagaataacttagatggtaatgatgctgcatagtga 2381939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 281 - 337
Target Start/End: Complemental strand, 44352865 - 44352809
Alignment:
Q  281 accggaccggccggttcaaccggttgaacagtgaaccggaccacagaccggtccgat 337  Q
    ||||||||||||||||| ||||||||||| |||||||||||| |  |||||||||||    
T  44352865 accggaccggccggttcgaccggttgaaccgtgaaccggacccctaaccggtccgat 44352809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 280 - 319
Target Start/End: Original strand, 33727999 - 33728038
Alignment:
Q  280 aaccggaccggccggttcaaccggttgaacagtgaaccgg 319  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  33727999 aaccggaccggccggttcaaccggttgaaccgtgaaccgg 33728038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 323
Target Start/End: Complemental strand, 55164612 - 55164572
Alignment:
Q  283 cggaccggccggttcaaccggttgaacagtgaaccggacca 323  Q
    |||||||||||||||||  ||||| ||||||||||||||||    
T  55164612 cggaccggccggttcaattggttggacagtgaaccggacca 55164572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 281 - 336
Target Start/End: Original strand, 6752724 - 6752779
Alignment:
Q  281 accggaccggccggttcaaccggttgaacagtgaaccggaccacagaccggtccga 336  Q
    ||||||||||||||||||||||||||||| | |||||||| ||| |||||||||||    
T  6752724 accggaccggccggttcaaccggttgaaccgggaaccggaacactgaccggtccga 6752779  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 281 - 336
Target Start/End: Complemental strand, 39843980 - 39843925
Alignment:
Q  281 accggaccggccggttcaaccggttgaacagtgaaccggaccacagaccggtccga 336  Q
    ||||||||||||||||||| ||||||||| | |||||||| ||| |||||||||||    
T  39843980 accggaccggccggttcaatcggttgaaccgggaaccggaacactgaccggtccga 39843925  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 281 - 322
Target Start/End: Complemental strand, 50211754 - 50211713
Alignment:
Q  281 accggaccggccggttcaaccggttgaacagtgaaccggacc 322  Q
    ||||||||||||||||||||||||||||| | ||||||||||    
T  50211754 accggaccggccggttcaaccggttgaaccgggaaccggacc 50211713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 281 - 336
Target Start/End: Original strand, 23091340 - 23091395
Alignment:
Q  281 accggaccggccggttcaaccggttgaacagtgaaccggaccacagaccggtccga 336  Q
    ||||||||||||||||||| ||||||||| | |||| ||| ||| |||||||||||    
T  23091340 accggaccggccggttcaatcggttgaaccgggaactggaacactgaccggtccga 23091395  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 336
Target Start/End: Original strand, 34151101 - 34151159
Alignment:
Q  278 aaaaccggaccggccggttcaaccggttgaacagtgaaccggaccacagaccggtccga 336  Q
    |||||||| ||| ||||||||||||||||||| | |||||| | ||| |||||||||||    
T  34151101 aaaaccgggccgaccggttcaaccggttgaaccgggaaccgaaacactgaccggtccga 34151159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 336
Target Start/End: Complemental strand, 34176023 - 34175965
Alignment:
Q  278 aaaaccggaccggccggttcaaccggttgaacagtgaaccggaccacagaccggtccga 336  Q
    |||||||| ||| ||||||||||||||||||| | |||||| | ||| |||||||||||    
T  34176023 aaaaccgggccgaccggttcaaccggttgaaccgggaaccgaaacactgaccggtccga 34175965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 321
Target Start/End: Original strand, 45268699 - 45268737
Alignment:
Q  283 cggaccggccggttcaaccggttgaacagtgaaccggac 321  Q
    ||||||||||||||||||||||||||| | |||||||||    
T  45268699 cggaccggccggttcaaccggttgaaccgggaaccggac 45268737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 322
Target Start/End: Original strand, 174247 - 174288
Alignment:
Q  281 accggaccggccggttcaaccggttgaacagtgaaccggacc 322  Q
    |||||||||||||||||||||||||| || | ||||||||||    
T  174247 accggaccggccggttcaaccggttggaccgggaaccggacc 174288  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 322
Target Start/End: Complemental strand, 13833398 - 13833357
Alignment:
Q  281 accggaccggccggttcaaccggttgaacagtgaaccggacc 322  Q
    |||||||||||||||||||||| |||||| | ||||||||||    
T  13833398 accggaccggccggttcaaccgattgaaccgagaaccggacc 13833357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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