View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17677_low_8 (Length: 340)
Name: NF17677_low_8
Description: NF17677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17677_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 76; Significance: 4e-35; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 2020343 - 2020260
Alignment:
| Q |
17 |
gctgcatgattttgaaagggacacttaacaacaaattagcgggtctcgatcccaagtaatatgacagcaaaaaatccacaatgc |
100 |
Q |
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| T |
2020343 |
gctgcatgattttgaaagggacacttaacaacaaattagcgggtctccatcccaagtaatatgacagcaaaaaaaccacaatgc |
2020260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 105 - 184
Target Start/End: Complemental strand, 2020138 - 2020059
Alignment:
| Q |
105 |
acctaagctaaaaaatataacataacttccatgcaatgatagatacattgatataaacacgagtcagaagcaatcacaat |
184 |
Q |
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| T |
2020138 |
acctaagctaaacaatataacataatttccatgcaatgatagatacattgatataaacacgagtcagaagcaatcacaat |
2020059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 251 - 318
Target Start/End: Complemental strand, 2019992 - 2019925
Alignment:
| Q |
251 |
taagagtcaatgtccataaagctatcaaatattgttattggatatttgcataacaataaaagccaaca |
318 |
Q |
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| T |
2019992 |
taagagtcaatgtccataaagctatcaaatattgttattggatatttgcataacaataaaagccaaca |
2019925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 2015025 - 2014935
Alignment:
| Q |
17 |
gctgcatgattttgaaagggacacttaacaacaaattagcgggtctcgatcccaagtaatatgacagcaaaaaatccacaatgcgactacc |
107 |
Q |
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| T |
2015025 |
gctgcaggattttgaatgggacacttaaaaacaaattaaagggtcttggtcgaaagtaatatgacagaaaaaagaccacaacgtgactacc |
2014935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 267 - 312
Target Start/End: Complemental strand, 2014701 - 2014656
Alignment:
| Q |
267 |
taaagctatcaaatattgttattggatatttgcataacaataaaag |
312 |
Q |
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| T |
2014701 |
taaaactatcaaatattgttattgaatatttgcataataataaaag |
2014656 |
T |
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