View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17677_low_9 (Length: 338)

Name: NF17677_low_9
Description: NF17677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17677_low_9
NF17677_low_9
[»] chr4 (6 HSPs)
chr4 (19-100)||(27080903-27080984)
chr4 (19-100)||(27148673-27148754)
chr4 (293-330)||(27081100-27081137)
chr4 (293-330)||(27148520-27148557)
chr4 (192-232)||(27080999-27081039)
chr4 (192-232)||(27148618-27148658)


Alignment Details
Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 27080903 - 27080984
Alignment:
Q  19 gtctcatggtccatcaaactcctctaataagtctctttaacctcctctactcggattctatacctatttcgatataatatag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27080903 gtctcatggtccatcaaactcctctaataagtctctttaacctcctctactcggattctatacctatttcgatataatatag 27080984  T

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Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 27148754 - 27148673
Alignment:
Q  19 gtctcatggtccatcaaactcctctaataagtctctttaacctcctctactcggattctatacctatttcgatataatatag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27148754 gtctcatggtccatcaaactcctctaataagtctctttaacctcctctactcggattctatacctatttcgatataatatag 27148673  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 330
Target Start/End: Original strand, 27081100 - 27081137
Alignment:
Q  293 gcaattattcgatccttataaacactacccttcttctc 330  Q
    ||||||||| |||||||||||||||| |||||||||||    
T  27081100 gcaattatttgatccttataaacacttcccttcttctc 27081137  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 330
Target Start/End: Complemental strand, 27148557 - 27148520
Alignment:
Q  293 gcaattattcgatccttataaacactacccttcttctc 330  Q
    ||||||||| |||||||||||||||| |||||||||||    
T  27148557 gcaattatttgatccttataaacacttcccttcttctc 27148520  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 232
Target Start/End: Original strand, 27080999 - 27081039
Alignment:
Q  192 atttatactttcctcttttacgttttgtcctttagctttgt 232  Q
    |||| ||||||||| |||||| |||||||||||||||||||    
T  27080999 atttttactttccttttttactttttgtcctttagctttgt 27081039  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 232
Target Start/End: Complemental strand, 27148658 - 27148618
Alignment:
Q  192 atttatactttcctcttttacgttttgtcctttagctttgt 232  Q
    |||| ||||||||| |||||| |||||||||||||||||||    
T  27148658 atttttactttccttttttactttttgtcctttagctttgt 27148618  T

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