View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17678_high_1 (Length: 850)
Name: NF17678_high_1
Description: NF17678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17678_high_1 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 744; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 744; E-Value: 0
Query Start/End: Original strand, 59 - 835
Target Start/End: Original strand, 17168918 - 17169696
Alignment:
| Q |
59 |
tgacataattcaatgtaactat--gtgtttgtgtcgtattggtgtctgtatcaaacacgataagtattcgacaccaggacacacctaatccgcggagtat |
156 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
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| T |
17168918 |
tgacataattcaatgtaactatatgtgtttgtgtcgtattggtgtctgtatcaaacatgataagtattcgacaccaggacacacctaatccgaggagtat |
17169017 |
T |
|
| Q |
157 |
gtgattcgtagcttatcatcttattcttaccaaatcgaaaaggaaccaacagcaatcacaggattatcaagatgcccagcaagaagtataatgcaagcag |
256 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
17169018 |
gtgtttcgtagcttatcatcttattcttaccaaatcgaaaaggaaccaacagcaatcacaggattatcaagatgaccagcaagaagtataatgcaagcag |
17169117 |
T |
|
| Q |
257 |
tataccattgttctaaacagatcattacagatgaaccaaaactaagtttggtaaattcccataattctctaaatgccatccaagacaatccattccatcc |
356 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17169118 |
tataccattgttctaaacagatcattacagatgaaccaagactaagtttggtaaattcccataattctctaaatgccatccaagacaatccattccatcc |
17169217 |
T |
|
| Q |
357 |
ttctttacaccaaccaatggcatagattaccaatgcaatagaaaatatccatcctgagatattacttgccattgctaaaccaatcactccccaatcaaat |
456 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17169218 |
ttctttacaccaaccaatggcatagattaccaatgcaatagaaaatatccatcctgagatattacttgccattgctaaaccaatcactccccaatcaaat |
17169317 |
T |
|
| Q |
457 |
acagtgatgaagatgtaaagtagaccattttggatgagtaatgtaaccattgctatgtacataataacattaactttgctttgtgcttgaagaaacttca |
556 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17169318 |
acagtgatgaagatgtaaagtagaccattttggatgagtaatgtaaccattgctatgtacataataacattaactttgctttgtgcttgaagaaacttca |
17169417 |
T |
|
| Q |
557 |
cgaggggtaaattgacggcgaaggaaaacatgtagggaattagtagaatagcatattttccggcaagatcggctatctctttttcttgaccaagaagttt |
656 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17169418 |
cgaggggtaaattgacggcgaaggaaaacatgtagggaattagtagaatagcatattttccggcaagatcggctatctctttttcttgaccaagaagttt |
17169517 |
T |
|
| Q |
657 |
caagattggagttgcatatagaagaattggcaagaggagtatacaagtggtgaagagtactatccatgacctttgaagataaataccagcattttgaaat |
756 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17169518 |
taagattggagttgcatatagaagaattggcaagaggagtatacaagtggtgaagagtactatccatgacctttgaagataaataccagcattttgaaat |
17169617 |
T |
|
| Q |
757 |
tttcctgcaccataagcttggccacatagtgttgctagtgcatttgacataccatactgcaattttacaagtgagactt |
835 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17169618 |
tttcctgcaccataagcttggccacatagtgttgctagtgcatttgacataccatactgcaattttacaagtgagactt |
17169696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 180 - 830
Target Start/End: Original strand, 17150489 - 17151139
Alignment:
| Q |
180 |
ttcttaccaaatcgaaaaggaaccaacagcaatcacaggattatcaagatgcccagcaagaagtataatgcaagcagtataccattgttctaaacagatc |
279 |
Q |
| |
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|||||||||||| ||| | ||||||| ||||||||||||||||||||||| ||||||||||| |||||| | ||||||||| ||||||||||| ||| |
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| T |
17150489 |
ttcttaccaaattgaatatgaaccaagagcaatcacaggattatcaagatagccagcaagaaggataatgattgtagtataccactgttctaaacaaatc |
17150588 |
T |
|
| Q |
280 |
attacagatgaaccaaaactaagtttggtaaattcccataattctctaaatgccatccaagacaatccattccatccttctttacaccaaccaatggcat |
379 |
Q |
| |
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|||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17150589 |
attacagatgaaccaaaacttagcttagtaaattcccataattctctaaatgccatccaagacaatccattccatccttctttacaccaaccaatggcat |
17150688 |
T |
|
| Q |
380 |
agattaccaatgcaatagaaaatatccatcctgagatattacttgccattgctaaaccaatcactccccaatcaaatacagtgatgaagatgtaaagtag |
479 |
Q |
| |
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| |||| ||||| | |||| |||||||| ||||||||||||||| ||||| ||| | | ||||||||||||||||| |||||||| |||||||| |
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| T |
17150689 |
aaattagttgagcaattgcaaatccccatcctgtgatattacttgccatagctaagccagttattccccaatcaaatacagaaatgaagatataaagtag |
17150788 |
T |
|
| Q |
480 |
accattttggatgagtaatgtaaccattgctatgtacataataacattaactttgctttgtgcttgaagaaacttcacgaggggtaaattgacggcgaag |
579 |
Q |
| |
|
||||||||| || || ||| | || |||||||||||||||||||| ||||||| ||||||||||||||||| ||| || |||||||| || || | |
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|
| T |
17150789 |
accattttgtattagcaatatcacaattgctatgtacataataactttaacttcactttgtgcttgaagaaatttctggatgggtaaatggatagcactg |
17150888 |
T |
|
| Q |
580 |
gaaaacatgtagggaattagtagaatagcatattttccggcaagatcggctatctctttttcttgaccaagaagtttcaagattggagttgcatatagaa |
679 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||| || || || || ||||| |||| |||||| ||||||| ||| ||||||||||||||||||| | |
|
|
| T |
17150889 |
gaaaacatgtatggaattataagaatagcatatttgccagctaggtcagctatttcttgttcttggccaagaaattttaagattggagttgcatatatat |
17150988 |
T |
|
| Q |
680 |
gaattggcaagaggagtatacaagtggtgaagagtactatccatgacctttgaagataaataccagcattttgaaattttcctgcaccataagcttggcc |
779 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| || | ||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
17150989 |
taattggcaataggagtatacaagtggtgaagagtataatacttgatctttgaacataaataccagcattttgaaattgtcctgcaccataagcttggcc |
17151088 |
T |
|
| Q |
780 |
acatagtgttgctagtgcatttgacataccatactgcaattttacaagtga |
830 |
Q |
| |
|
||| |||||||||| ||| ||||||||||| |||||||||||||| |||| |
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|
| T |
17151089 |
acacagtgttgctattgccgttgacataccaaactgcaattttacatgtga |
17151139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 182 - 830
Target Start/End: Original strand, 17137190 - 17137838
Alignment:
| Q |
182 |
cttaccaaatcgaaaaggaaccaacagcaatcacaggattatcaagatgcccagcaagaagtataatgcaagcagtataccattgttctaaacagatcat |
281 |
Q |
| |
|
|||||||||| ||| ||||||||| ||||||||||||||||||||| || ||||||||||| ||||||||| || ||||||| ||||||||||| ||||| |
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|
| T |
17137190 |
cttaccaaattgaataggaaccaagagcaatcacaggattatcaaggtgaccagcaagaaggataatgcaaacactataccactgttctaaacaaatcat |
17137289 |
T |
|
| Q |
282 |
tacagatgaaccaaaactaagtttggtaaattcccataattctctaaatgccatccaagacaatccattccatccttctttacaccaaccaatggcatag |
381 |
Q |
| |
|
| |||||||||||| ||| ||| | ||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||| ||||||||||| |||| |
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|
| T |
17137290 |
tccagatgaaccaagacttagtattgtaaattcccatagttccctaaatgccatccaagataatccattccatccttctttggaccaaccaatgacataa |
17137389 |
T |
|
| Q |
382 |
attaccaatgcaatagaaaatatccatcctgagatattacttgccattgctaaaccaatcactccccaatcaaatacagtgatgaagatgtaaagtagac |
481 |
Q |
| |
|
||||| | |||||||||||| |||||||| |||||||||||||| ||||| |||| | |||||| |||||||||| ||||||||||||||||||| |
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|
| T |
17137390 |
attactagagcaatagaaaatccccatcctgtgatattacttgccagagctaagccaaatattccccactcaaatacagaaatgaagatgtaaagtagac |
17137489 |
T |
|
| Q |
482 |
cattttggatgagtaatgtaaccattgctatgtacataataacattaactttgctttgtgcttgaagaaacttcacgaggggtaaattgacggcgaagga |
581 |
Q |
| |
|
||||||| |||||||| | | || |||| ||||||||||||||||||||| ||||||||||||||| ||| || ||||||||||| || ||||| |
|
|
| T |
17137490 |
cattttgtatgagtaaaaacaatagtgatatgcacataataacattaactttgcattgtgcttgaagaaatttcttgatgggtaaattgatagcaaagga |
17137589 |
T |
|
| Q |
582 |
aaacatgtagggaattagtagaatagcatattttccggcaagatcggctatctctttttcttgaccaagaagtttcaagattggagttgcatatagaaga |
681 |
Q |
| |
|
||||||| | ||||||| | |||| |||||||| || || ||||| ||||| |||| |||||| ||||||| ||| |||||||| |||||||||| | || |
|
|
| T |
17137590 |
aaacatgcaaggaattatttgaattgcatatttgccagctagatcagctatttcttgttcttggccaagaaattttaagattggggttgcatatatatga |
17137689 |
T |
|
| Q |
682 |
attggcaagaggagtatacaagtggtgaagagtactatccatgacctttgaagataaataccagcattttgaaattttcctgcaccataagcttggccac |
781 |
Q |
| |
|
|| ||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||| |
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|
| T |
17137690 |
ataggcaagattagtatgcaagtggtgaagagtataatccatgacctttgaagataaataccagcactttgaaattgtcttgcaccataagcttggccac |
17137789 |
T |
|
| Q |
782 |
atagtgttgctagtgcatttgacataccatactgcaattttacaagtga |
830 |
Q |
| |
|
| ||||||||||||||| ||||||||||| |||| ||||||||| |||| |
|
|
| T |
17137790 |
agagtgttgctagtgcagttgacataccaaactgtaattttacatgtga |
17137838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 49
Target Start/End: Complemental strand, 37402166 - 37402128
Alignment:
| Q |
11 |
gcagcacagacacgaacaaatcgacaccgattataattt |
49 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37402166 |
gcagcacagacacgaacaaatcgacaccgattataattt |
37402128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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