View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17678_high_11 (Length: 296)
Name: NF17678_high_11
Description: NF17678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17678_high_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 19 - 263
Target Start/End: Original strand, 2631057 - 2631301
Alignment:
| Q |
19 |
gatgtagtatcattaactataatcctaattcaaaagagaactataagggcgcggggagctatcaaatgaaccatctgaaacaaatatactcggtaagtat |
118 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2631057 |
gatgtagtatcattaactatactcctaatgcaaaagagaactataagggcgcggggagctatcaaatgaaccatctgaaacaaatatactcggtaagtat |
2631156 |
T |
|
| Q |
119 |
caaataaacttcaccttattttaataatcacaaagcatattgtaagtcaatttcctcgcaaattcaaagagaactgaattgtattatggatctgacctaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
2631157 |
caaataaacttcaccttattttaataatcacaaagcatattgtaagtcaatttcctcgcaaattcaaagagaactgaaatgtattatggatctgacctaa |
2631256 |
T |
|
| Q |
219 |
cttctgttattggatcaaaatacacccaagactttccattcttaa |
263 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2631257 |
cttctgttattggatcaaaatacacccaagactttccattcttaa |
2631301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University