View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17678_high_16 (Length: 265)
Name: NF17678_high_16
Description: NF17678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17678_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 255
Target Start/End: Complemental strand, 30684898 - 30684661
Alignment:
| Q |
18 |
ctgacaatgttctgatgatggtctgacacaagttttttgatttcgtttagagctacactatgacgagatttgagaagccgcttgactgcaactgattgac |
117 |
Q |
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| T |
30684898 |
ctgacaatgttctgatgatggtctgacacaagttttttgatttcgtttagagctacactatgacgagatttgagaagccgcttgactgcaactgattgac |
30684799 |
T |
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| Q |
118 |
catcatgcaggacagcggtagcattcgtccttctccttccccggccaatctcnnnnnnngaaacgaataattcgccaattatttctccatcaacaccttc |
217 |
Q |
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| T |
30684798 |
catcatgcaggacagcggtagcattcgtccttctccttccccggccaatctctttttttgaaacgaataattcgccaattatttctccatcaacaccttc |
30684699 |
T |
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| Q |
218 |
attaaagttcatcgatacttctctattattatcctttg |
255 |
Q |
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| T |
30684698 |
attaaagttcatcgatacttctctattagtatcctttg |
30684661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 113
Target Start/End: Complemental strand, 30976924 - 30976880
Alignment:
| Q |
69 |
gctacactatgacgagatttgagaagccgcttgactgcaactgat |
113 |
Q |
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| T |
30976924 |
gctacactatgatgagctttgacaagccgcttgactgcaactgat |
30976880 |
T |
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