View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17678_high_18 (Length: 239)

Name: NF17678_high_18
Description: NF17678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17678_high_18
NF17678_high_18
[»] chr6 (15 HSPs)
chr6 (19-232)||(4602460-4602673)
chr6 (19-188)||(4617737-4617906)
chr6 (19-210)||(4592924-4593115)
chr6 (141-230)||(4299194-4299283)
chr6 (34-232)||(4626619-4626817)
chr6 (19-210)||(4564404-4564595)
chr6 (161-230)||(4259547-4259616)
chr6 (19-215)||(4514372-4514568)
chr6 (141-215)||(4470488-4470562)
chr6 (151-215)||(4561189-4561253)
chr6 (151-215)||(4574993-4575057)
chr6 (161-215)||(4266559-4266613)
chr6 (141-218)||(4622822-4622899)
chr6 (115-215)||(4458280-4458380)
chr6 (161-215)||(4481378-4481432)
[»] chr3 (1 HSPs)
chr3 (19-188)||(1281829-1281998)
[»] scaffold0199 (1 HSPs)
scaffold0199 (19-182)||(185-348)
[»] chr8 (2 HSPs)
chr8 (19-182)||(1674948-1675111)
chr8 (117-215)||(20863192-20863290)
[»] chr5 (2 HSPs)
chr5 (161-230)||(24107045-24107114)
chr5 (161-215)||(24103684-24103738)
[»] chr7 (1 HSPs)
chr7 (161-227)||(3087093-3087159)
[»] scaffold0477 (1 HSPs)
scaffold0477 (141-230)||(4062-4151)
[»] scaffold0288 (1 HSPs)
scaffold0288 (19-227)||(2969-3177)


Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 19 - 232
Target Start/End: Complemental strand, 4602673 - 4602460
Alignment:
Q  19 attccaggtttgaaaaactttcggttgaaagacattcttgactatatcaggacaacagatccaaatgatattatggtagaattcttttttgaaattgcag 118  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4602673 attccaggtttgaaaaactttcggttgaaggacattcttgactatatcaggacaacagatccaaatgatattatggtagaattcttttttgaaattgcag 4602574  T
Q  119 atagatttaatagagactctattattcttttgaatacttacaatgaacttgagagtgatgtaatgaatgcactatattctatgttcccttctttatatac 218  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4602573 atagatttaatagagactctactattcttttgaatacttacaatgaacttgagagtgatgtaatgaatgcactatattctatgttcccttctttatatac 4602474  T
Q  219 tatcggacctttgc 232  Q
    ||||||||||||||    
T  4602473 tatcggacctttgc 4602460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 19 - 188
Target Start/End: Complemental strand, 4617906 - 4617737
Alignment:
Q  19 attccaggtttgaaaaactttcggttgaaagacattcttgactatatcaggacaacagatccaaatgatattatggtagaattcttttttgaaattgcag 118  Q
    ||||| ||||||||||||||||||||||| |||||  |||||| ||||||||||||| ||||||||||||||||| ||||||||||| | ||| ||||||    
T  4617906 attcccggtttgaaaaactttcggttgaaggacatcgttgactttatcaggacaacaaatccaaatgatattatgttagaattctttatagaagttgcag 4617807  T
Q  119 atagatttaatagagactctattattcttttgaatacttacaatgaacttgagagtgatgtaatgaatgc 188  Q
    || || |||| | |||| ||| ||||||||||||||||| |||||||||||||||||||||||| |||||    
T  4617806 atcgagttaacaaagacactactattcttttgaatactttcaatgaacttgagagtgatgtaataaatgc 4617737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 19 - 210
Target Start/End: Complemental strand, 4593115 - 4592924
Alignment:
Q  19 attccaggtttgaaaaactttcggttgaaagacattcttgactatatcaggacaacagatccaaatgatattatggtagaattcttttttgaaattgcag 118  Q
    ||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||| || | ||  |  ||||  | || |    
T  4593115 attccaggtttgaaaaactttcggttgaaggacattgctgactatatcaggacaacagatccaaatgatattatgttaaactttgtaattgatgtggctg 4593016  T
Q  119 atagatttaatagagactctattattcttttgaatacttacaatgaacttgagagtgatgtaatgaatgcactatattctatgttcccttct 210  Q
    ||| |  | ||| | |||||| |||| |||||||||||| |||||||||||||||||||||||| ||||| || |  |||||||| ||||||    
T  4593015 ataaagatcataaaaactctactattattttgaatactttcaatgaacttgagagtgatgtaataaatgctctctcctctatgtttccttct 4592924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 141 - 230
Target Start/End: Original strand, 4299194 - 4299283
Alignment:
Q  141 tattcttttgaatacttacaatgaacttgagagtgatgtaatgaatgcactatattctatgttcccttctttatatactatcggaccttt 230  Q
    |||| |||| ||||||||  |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||    
T  4299194 tattgtttttaatacttatgatgaacttgagagtgatgtaatgaatgctctctattctatgttcccttctttatatactattggaccttt 4299283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 34 - 232
Target Start/End: Complemental strand, 4626817 - 4626619
Alignment:
Q  34 aactttcggttgaaagacattcttgactatatcaggacaacagatccaaatgatattatggtagaattcttttttgaaattgcagatagatttaatagag 133  Q
    ||||||||| |||| ||| ||||| ||| ||| ||||||||| |||| |||||| | |||||||||||  |  |||||   |||||||||||| | ||||    
T  4626817 aactttcggctgaaggaccttcttaactttataaggacaacaaatcctaatgatgtcatggtagaatttctcattgaagcggcagatagatttcacagag 4626718  T
Q  134 actctattattcttttgaatacttacaatgaacttgagagtgatgtaatgaatgcactatattctatgttcccttctttatatactatcggacctttgc 232  Q
      ||   |||| |||| || |||||| ||||||||||| |||||||||||||||| || ||||||| ||||| |||| ||||||| || ||||||||||    
T  4626717 catcggctattgttttcaacacttacgatgaacttgagggtgatgtaatgaatgcgctctattctacgttcctttctgtatataccattggacctttgc 4626619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 210
Target Start/End: Complemental strand, 4564595 - 4564404
Alignment:
Q  19 attccaggtttgaaaaactttcggttgaaagacattcttgactatatcaggacaacagatccaaatgatattatggtagaattcttttttgaaattgcag 118  Q
    |||||||||||||||||||||||||| || || ||  |||||  ||||||||||||||||||||||||||||||| |||| ||  |  ||||    || |    
T  4564595 attccaggtttgaaaaactttcggttaaaggatatctttgacagtatcaggacaacagatccaaatgatattatgttagactttgtaattgatgcggctg 4564496  T
Q  119 atagatttaatagagactctattattcttttgaatacttacaatgaacttgagagtgatgtaatgaatgcactatattctatgttcccttct 210  Q
    ||| | ||  | |||||||||  ||| |||||||||||| | |||||||| ||||||||||||| ||||| || |  |||||||| ||||||    
T  4564495 ataaagttcttggagactctacaattgttttgaatactttccatgaactttagagtgatgtaataaatgctctctcctctatgtttccttct 4564404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 4259547 - 4259616
Alignment:
Q  161 atgaacttgagagtgatgtaatgaatgcactatattctatgttcccttctttatatactatcggaccttt 230  Q
    |||||||||||||||||||||||||||  || |||||||||||||||||||||||| |||| ||||||||    
T  4259547 atgaacttgagagtgatgtaatgaatgtgctctattctatgttcccttctttatatgctattggaccttt 4259616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 215
Target Start/End: Original strand, 4514372 - 4514568
Alignment:
Q  19 attccaggtttgaaaaactttcggttgaaagacattcttgactatatcaggacaacagatccaaatgatattatggtagaattcttttttgaaattgcag 118  Q
    ||||||||||||  ||||||| |  |||| ||| ||| ||| | |||  ||||||||||| | |||||| | ||| |||||||  | |||||||| | ||    
T  4514372 attccaggtttgcgaaactttagactgaaggaccttcctgattttatacggacaacagatgctaatgatttgatgttagaatttatctttgaaatggtag 4514471  T
Q  119 atagatttaatagagactctattattcttttgaatacttacaatgaacttgagagtgatgtaatgaatgcactatattctatgttcccttctttata 215  Q
    ||||| || ||||||  |||  |||| |||| |||||||  ||||| |||||||||||||| |||||||| || ||||||||| |||||||| ||||    
T  4514472 atagacttcatagagcttctgctatttttttaaatacttctaatgatcttgagagtgatgttatgaatgctctttattctatgctcccttctctata 4514568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 141 - 215
Target Start/End: Complemental strand, 4470562 - 4470488
Alignment:
Q  141 tattcttttgaatacttacaatgaacttgagagtgatgtaatgaatgcactatattctatgttcccttctttata 215  Q
    |||| ||||||||||||  ||||||||||| |||||||| ||||||| ||| |||||||| ||||||||| ||||    
T  4470562 tattgttttgaatacttctaatgaacttgaaagtgatgttatgaatgaactctattctatattcccttctctata 4470488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 151 - 215
Target Start/End: Complemental strand, 4561253 - 4561189
Alignment:
Q  151 aatacttacaatgaacttgagagtgatgtaatgaatgcactatattctatgttcccttctttata 215  Q
    |||||||  |||||||||||||||||||| ||||||||  | |||||||||||||||||| ||||    
T  4561253 aatacttctaatgaacttgagagtgatgttatgaatgctttctattctatgttcccttctctata 4561189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 151 - 215
Target Start/End: Complemental strand, 4575057 - 4574993
Alignment:
Q  151 aatacttacaatgaacttgagagtgatgtaatgaatgcactatattctatgttcccttctttata 215  Q
    |||||||  |||||||||||||||||||| ||||||||  | |||||||||||||||||| ||||    
T  4575057 aatacttctaatgaacttgagagtgatgttatgaatgctttctattctatgttcccttctctata 4574993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 161 - 215
Target Start/End: Original strand, 4266559 - 4266613
Alignment:
Q  161 atgaacttgagagtgatgtaatgaatgcactatattctatgttcccttctttata 215  Q
    ||||||||||||||||||| |||||||| || || ||||||||||||||| ||||    
T  4266559 atgaacttgagagtgatgttatgaatgctctctactctatgttcccttctatata 4266613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 218
Target Start/End: Complemental strand, 4622899 - 4622822
Alignment:
Q  141 tattcttttgaatacttacaatgaacttgagagtgatgtaatgaatgcactatattctatgttcccttctttatatac 218  Q
    |||| |||| |||||||| ||||||||||||| |||||  |||||||| || ||||| |||||||| ||||| |||||    
T  4622899 tattatttttaatacttataatgaacttgagactgatgcgatgaatgcgctctattcaatgttcccatctttgtatac 4622822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 215
Target Start/End: Complemental strand, 4458380 - 4458280
Alignment:
Q  115 gcagatagatttaatagagactctattattcttttgaatacttacaatgaacttgagagtgatgtaatgaatgcactatattctatgttcccttctttat 214  Q
    |||||||||| | |||||| ||||  |||| || | |||||||   ||||||||||||||||||| |||||| | || || ||||||||||||||| |||    
T  4458380 gcagatagatgtcatagagcctcttctattgttatcaatacttcttatgaacttgagagtgatgttatgaatactctctactctatgttcccttctatat 4458281  T
Q  215 a 215  Q
    |    
T  4458280 a 4458280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 215
Target Start/End: Complemental strand, 4481432 - 4481378
Alignment:
Q  161 atgaacttgagagtgatgtaatgaatgcactatattctatgttcccttctttata 215  Q
    ||||||||||||||||||| |||||| | || |||||||| ||||||||| ||||    
T  4481432 atgaacttgagagtgatgttatgaattctctctattctatattcccttctctata 4481378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 19 - 188
Target Start/End: Complemental strand, 1281998 - 1281829
Alignment:
Q  19 attccaggtttgaaaaactttcggttgaaagacattcttgactatatcaggacaacagatccaaatgatattatggtagaattcttttttgaaattgcag 118  Q
    ||||||||||||||||| || |||||||| || ||| |||||| ||||||||||| ||||| ||| ||||||||| ||||||||||| ||||||| ||||    
T  1281998 attccaggtttgaaaaatttccggttgaaggatattgttgactttatcaggacaagagatcgaaacgatattatgttagaattctttattgaaatggcag 1281899  T
Q  119 atagatttaatagagactctattattcttttgaatacttacaatgaacttgagagtgatgtaatgaatgc 188  Q
    ||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||    
T  1281898 atagagttaatagagactctactattcttttgaatactttcaatgaacttgagagtgatgtaataaatgc 1281829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 182
Target Start/End: Complemental strand, 348 - 185
Alignment:
Q  19 attccaggtttgaaaaactttcggttgaaagacattcttgactatatcaggacaacagatccaaatgatattatggtagaattcttttttgaaattgcag 118  Q
    ||||||||||||||||||||||||||||| ||  || |||||| |||||| ||||| |||||||||||||||||| |||| || ||  ||||  | || |    
T  348 attccaggtttgaaaaactttcggttgaaggatgttgttgactgtatcagaacaacggatccaaatgatattatgttagactttttaattgatgtcgctg 249  T
Q  119 atagatttaatagagactctattattcttttgaatacttacaatgaacttgagagtgatgtaat 182  Q
    ||| | || | ||||||||||  ||| |||||||||||| ||||||||||||||||||||||||    
T  248 ataaagttcacagagactctacaattattttgaatactttcaatgaacttgagagtgatgtaat 185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 182
Target Start/End: Complemental strand, 1675111 - 1674948
Alignment:
Q  19 attccaggtttgaaaaactttcggttgaaagacattcttgactatatcaggacaacagatccaaatgatattatggtagaattcttttttgaaattgcag 118  Q
    ||||||||||||||||||||||||||||| ||  || |||||| |||||| ||||| |||||||||||||||||| |||| || ||  ||||  | || |    
T  1675111 attccaggtttgaaaaactttcggttgaaggatgttgttgactgtatcagaacaacggatccaaatgatattatgttagactttttaattgatgtcgctg 1675012  T
Q  119 atagatttaatagagactctattattcttttgaatacttacaatgaacttgagagtgatgtaat 182  Q
    ||| | || | ||||||||||  ||| |||||||||||| ||||||||||||||||||||||||    
T  1675011 ataaagttcacagagactctacaattattttgaatactttcaatgaacttgagagtgatgtaat 1674948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 117 - 215
Target Start/End: Original strand, 20863192 - 20863290
Alignment:
Q  117 agatagatttaatagagactctattattcttttgaatacttacaatgaacttgagagtgatgtaatgaatgcactatattctatgttcccttctttata 215  Q
    |||||||||| | |||| ||||  |||| |||| ||||||| |||||| |||||||||||||| |||||||  || |||||||||||||||||| ||||    
T  20863192 agatagatttcacagagcctctgctattgttttcaatactttcaatgagcttgagagtgatgttatgaatgttctctattctatgttcccttctctata 20863290  T

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Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 24107114 - 24107045
Alignment:
Q  161 atgaacttgagagtgatgtaatgaatgcactatattctatgttcccttctttatatactatcggaccttt 230  Q
    |||||||||||||||||||||||||| | || |||||||||||||||| |||||||||||| ||||||||    
T  24107114 atgaacttgagagtgatgtaatgaatacgctctattctatgttcccttttttatatactattggaccttt 24107045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 161 - 215
Target Start/End: Complemental strand, 24103738 - 24103684
Alignment:
Q  161 atgaacttgagagtgatgtaatgaatgcactatattctatgttcccttctttata 215  Q
    ||||||||||||||||||| |||||||| || || ||||||||||||||| ||||    
T  24103738 atgaacttgagagtgatgttatgaatgctctctactctatgttcccttctatata 24103684  T

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Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 161 - 227
Target Start/End: Complemental strand, 3087159 - 3087093
Alignment:
Q  161 atgaacttgagagtgatgtaatgaatgcactatattctatgttcccttctttatatactatcggacc 227  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||| || |||||    
T  3087159 atgaacttgagagtgatgtaatgaatgcgctatattctgtgttcccttcattatataccattggacc 3087093  T

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Target: scaffold0477 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 141 - 230
Target Start/End: Original strand, 4062 - 4151
Alignment:
Q  141 tattcttttgaatacttacaatgaacttgagagtgatgtaatgaatgcactatattctatgttcccttctttatatactatcggaccttt 230  Q
    |||| |||| || |||||| ||||||||||||| | |||| ||||||| || |||||||||||||||||||||||||| || ||||||||    
T  4062 tattgttttcaacacttacgatgaacttgagagcggtgtattgaatgctctctattctatgttcccttctttatataccattggaccttt 4151  T

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Target: scaffold0288 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 227
Target Start/End: Original strand, 2969 - 3177
Alignment:
Q  19 attccaggtttgaaaaactttcggttgaaagacattcttgactatatcaggacaacagatccaaatgatattatggtagaattcttttttgaaattgcag 118  Q
    ||||| ||| |||||||||||||  | || ||| ||| ||||| ||| || |||| |||||  |||||| ||||||||||||| ||  |||||   ||||    
T  2969 attccgggtatgaaaaactttcgactaaaggaccttcctgactttataagaacaaaagatctgaatgattttatggtagaatttttcattgaagcagcag 3068  T
Q  119 atagatttaatagagactctattattcttttgaatacttacaatgaacttgagagtgatgtaatgaatgcactatattctatgttcccttctttatatac 218  Q
    ||  |||| | ||||  |||   ||| |||| || ||||| ||||||||||||||||||||| ||||||| ||  | ||||||||||| || ||||| |     
T  3069 atcaatttcacagagcttctgcaattgtttttaacacttataatgaacttgagagtgatgtactgaatgcgctccactctatgttcccatcattatacag 3168  T
Q  219 tatcggacc 227  Q
    |||||||||    
T  3169 tatcggacc 3177  T

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