View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17678_high_3 (Length: 538)
Name: NF17678_high_3
Description: NF17678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17678_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 20 - 313
Target Start/End: Complemental strand, 14785107 - 14784814
Alignment:
| Q |
20 |
gttaaagctttccacaaaggaga--atcatataattgagaatctatggttactctaagatctttattactcccacacttactataaagaatcttgcacca |
117 |
Q |
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||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
14785107 |
gttaaagctttccacaaaggagagaatcatatgattgagaatctatggtttctctaagatctttattactcccacacttactataaagaaccttgcacca |
14785008 |
T |
|
| Q |
118 |
aaggtcatcaagtttggttataacattccaaagcatcttcgtaagaaaagcgtcattcatctgatgaggtctcttatgtctaggccaccctcattctttg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
14785007 |
aaggtcatcaagtttggttataacattccaaagcatcttcgtaagaaaagcatcattcatctgatgagttctcttatgtctaggccaccctcattctttg |
14784908 |
T |
|
| Q |
218 |
gaagacaacaaatgtcttgccccacaagacggggtctgcgagattggtcatacttaacccataaaaagttcatttgaattttttacatctcgttac |
313 |
Q |
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| T |
14784907 |
gaagacaacaaatgtcttgccccacaagac-gggtctgcgagatt-gtcatatttaacccataaaatgttcatttgaattttttacatctcgttac |
14784814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 351 - 521
Target Start/End: Complemental strand, 14784813 - 14784643
Alignment:
| Q |
351 |
gtatgataagagctcaaagctgatttagatggaataagtttgccatcaaaacttaagcattgttgcttccaaaccacttactctgcttttaattttgtca |
450 |
Q |
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|||||||||||||||||| ||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14784813 |
gtatgataagagctcaaaactgatttagatagcgtaagtttgccatcaaaactcaagcattgttgcttccaaaccacttactctgcttttaattttgtca |
14784714 |
T |
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| Q |
451 |
acgatgttatgaaactttcccttggtagctctacctgaacttatgtttgcctccaaatacctcgccatatt |
521 |
Q |
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| T |
14784713 |
acgatgttatgaaactttcccttggtagctctacctggacttatgtttgcctccaaatacctcgccatatt |
14784643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 20 - 468
Target Start/End: Original strand, 31116509 - 31116960
Alignment:
| Q |
20 |
gttaaagctttccacaaaggagaatcatataattgagaatctatggttactctaagatctttattactcccacacttactataaagaatcttgcaccaaa |
119 |
Q |
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|||||||||||||||||||| ||||||||| ||| ||||||||||||||| |||||||||||||| |||||| ||||||||||||||| ||| ||||| | |
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| T |
31116509 |
gttaaagctttccacaaaggggaatcatatgatttagaatctatggttaccctaagatctttattcctcccatacttactataaagaagcttacaccata |
31116608 |
T |
|
| Q |
120 |
ggtcatcaagtttggttataacattccaaagcatcttcgtaagaaaagcgtcattcatctgatgaggtctctt-atgtctaggccaccctcattctttgg |
218 |
Q |
| |
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|||||||||| ||||| || | |||| ||||||||||| |||||||| |||| ||||| |||||||||||||| ||| |||||||||||||||| || || |
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| T |
31116609 |
ggtcatcaagcttggtgatcagattcaaaagcatcttcataagaaaaacgtctttcatatgatgaggtctcttaatgcctaggccaccctcatttttagg |
31116708 |
T |
|
| Q |
219 |
aagacaacaaatgtcttgccccacaagacggggtctgcgagattggtcatacttaacccataaaaagttcatttga--attttttacatctcgttacaaa |
316 |
Q |
| |
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||||||||||||||| ||||||||| ||||||||| |||||||| | | | ||||||||||| || ||||| |||||| ||| ||| |||||| |
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| T |
31116709 |
aagacaacaaatgtcccatcccacaagatggggtctgcaagattggttaatatcatcccataaaaagctcctttgattttttttttcatttcgctacaaa |
31116808 |
T |
|
| Q |
317 |
gggtcttaggctgcttagaatactgcatatgatagtatgata-agagctcaaagctgatttagatggaataagtttgccatcaaaacttaagcattgttg |
415 |
Q |
| |
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|||| ||||| |||||| |||||||||||||||||||| || | |||||||||||||||||||| | ||||| || | ||||||||||||||| ||| |
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| T |
31116809 |
gggttttagggagcttagcatactgcatatgatagtatggtataaagctcaaagctgatttagataaagtaagtctgtcggcaaaacttaagcattattg |
31116908 |
T |
|
| Q |
416 |
cttccaaaccacttactctgcttttaattttgtcaacgatgttatgaaacttt |
468 |
Q |
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||||| ||||||||| |||| ||| |||||| |||| |||||||||||||||| |
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| T |
31116909 |
cttcc-aaccacttagtctgttttgaattttttcaatgatgttatgaaacttt |
31116960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 181; Significance: 1e-97; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 20 - 510
Target Start/End: Original strand, 48898892 - 48899382
Alignment:
| Q |
20 |
gttaaagctttccacaaaggagaatcatataattgagaatctatggttactctaagatctttattactcccacacttactataaagaatcttgcaccaaa |
119 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||| ||||||||||| ||| |||||||||||||| |||||| |||||||||| |||| ||| ||||| | |
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| T |
48898892 |
gttaaagctttccataaaggagaatcatatgatttagaatctatggctaccctaagatctttattcctcccatacttactatagagaaccttacaccata |
48898991 |
T |
|
| Q |
120 |
ggtcatcaagtttggttataacattccaaagcatcttcgtaagaaaagcgtcattcatctgatgaggtctctt-atgtctaggccaccctcattctttgg |
218 |
Q |
| |
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|||||| | | ||||| || | |||||||| ||||||| ||||||||||||||||||| | ||||||| | || ||| ||||||||||||||||||| || |
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| T |
48898992 |
ggtcattaggcttggtgattagattccaaaacatcttcataagaaaagcgtcattcatattatgaggttttttaatgcctaggccaccctcattcttagg |
48899091 |
T |
|
| Q |
219 |
aagacaacaaatgtcttgccccacaagacggggtctgcgagattggtcatacttaacccataaaaagttcatttgaattttttacatctcgttacaaagg |
318 |
Q |
| |
|
||||||||||||||| || |||||| ||| | |||||||||||||| | ||||||||||||| || | |||||||||| ||||||||||||||| |
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| T |
48899092 |
aagacaacaaatgtcccatccaacaagatgggttttgcgagattggtcagtatcaacccataaaaagctcctctgaattttttccatctcgttacaaagc |
48899191 |
T |
|
| Q |
319 |
gtcttaggctgcttagaatactgcatatgatagtatgata-agagctcaaagctgatttagatggaataagtttgccatcaaaacttaagcattgttgct |
417 |
Q |
| |
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| ||||| |||||| |||||||||||||||||| | || |||||||||| || |||||||| | ||||| | || |||||| |||||||||||||| |
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| T |
48899192 |
attttagggagcttagcatactgcatatgatagtaaggtatagagctcaaaactaatttagataaagtaagtctaccgacaaaac-taagcattgttgct |
48899290 |
T |
|
| Q |
418 |
tccaaaccacttactctgcttttaattttgtcaacgatgttatgaaactttcccttggtagctctacctgaacttatgtttgcctccaaatac |
510 |
Q |
| |
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||| ||||||||| ||| ||| ||||||||||| || |||||||||||||||| | ||||||||||||| ||| ||||| ||| |||||||| |
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| T |
48899291 |
tcc-aaccacttagtctattttgaattttgtcaatgacgttatgaaactttcccctagtagctctacctgcactaatgttagcccccaaatac |
48899382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 115 - 230
Target Start/End: Complemental strand, 26084893 - 26084777
Alignment:
| Q |
115 |
ccaaaggtcatcaagtttggttataacattccaaagcatcttcgtaagaaaagcgtcattcatctgatgaggtctctt-atgtctaggccaccctcattc |
213 |
Q |
| |
|
|||||||||||| |||| || || | |||||||| ||||||| | ||||||||||||||||| || ||||||||||| ||| ||| |||||||| | | |
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| T |
26084893 |
ccaaaggtcatctggttttgtgatcaaattccaaaacatcttcattagaaaagcgtcattcatatggtgaggtctcttaatgcctaagccacccttaatt |
26084794 |
T |
|
| Q |
214 |
tttggaagacaacaaat |
230 |
Q |
| |
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|| |||||||||||||| |
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|
| T |
26084793 |
ttgggaagacaacaaat |
26084777 |
T |
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