View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17678_high_4 (Length: 472)
Name: NF17678_high_4
Description: NF17678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17678_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 12 - 458
Target Start/End: Complemental strand, 27318108 - 27317662
Alignment:
| Q |
12 |
gcagcacagaagggtaacaagtctctatttgttcatgtccccttattttcaagaatcgatgaagaaactcagatgagatttacatcctctcttttggagg |
111 |
Q |
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| T |
27318108 |
gcagaacagaagggtaacaagtctctatttgttcatgtccccttattttcaagaatcgatgaagaaactcagatgagatttacatcctctcttttggagg |
27318009 |
T |
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| Q |
112 |
ccattgcttctgcatgttaataatgcaattgattgaattgaatacaaggactgccatgtcctgtcatctggttgtgtatgtaaatcatctgtctcaatag |
211 |
Q |
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| T |
27318008 |
ccattgcttctgcatgttaataatgcaattgattgaattgtatgcaaggactgccatgtcctgtcatctggttgtgtatgtaaatcatttgtctcaatag |
27317909 |
T |
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| Q |
212 |
aaatgcaattgtataacaattattgagggaagaacaaagttgttctttgatttattttctttggcgagtcgttaatcgatgtataattcatgaatgtctg |
311 |
Q |
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| T |
27317908 |
aaatgcaattgtataacaattattgagtgaagaacaaagttgttctttgatttattttctttggcgagtcgttaatcgatgtataattcatgaatgtctg |
27317809 |
T |
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| Q |
312 |
ttcttggattgcacagatatatacatatgcttgtgattactgaatcttattaactgcaaatgttatgcaattccacatcataatatagttctaagtccac |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27317808 |
ttcttggattgcacagatatatacatatgcttgtgattactgaatcttattaactgcaaatgttatgcaattccacatcataatatagttctaagtccac |
27317709 |
T |
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| Q |
412 |
catcaaaagaaataaataatttgctattggtaatgacacacatgttg |
458 |
Q |
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| T |
27317708 |
catcaaaagaaataaataatttgctattggtaatgacacacatgttg |
27317662 |
T |
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