View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17678_high_8 (Length: 355)
Name: NF17678_high_8
Description: NF17678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17678_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 19 - 347
Target Start/End: Original strand, 34880964 - 34881300
Alignment:
| Q |
19 |
tgaaaagctgaaatcatcgatgaagttgtagttagttgaataggag-------cataagatgtacaagaccaataatagatgaacatgattgaatatcta |
111 |
Q |
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| T |
34880964 |
tgaaaagctgaaatcatcgatgaagttgtagttagttgaataggagcatggagcataagatgtacaagaccaataatagatgaacatgattgaatatcta |
34881063 |
T |
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| Q |
112 |
agcaagtgacaattttgtaggaaagtgcttcatgaaaattttctttcaattattagattttacagaaatgatagctgacaagattgtcacctcattatgg |
211 |
Q |
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| T |
34881064 |
agcaagtgacaattttgtaggaaagtgcttcatgaaaattttctttcaattattagattttacagaaatgatagctgacaagattgtcacctcattatgg |
34881163 |
T |
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| Q |
212 |
ccaatccacctggcttgagtatcctactcatctccttgaaaatatcaagaggctttgttaggtagtcaacactgacctgcaagacatattgagttttcaa |
311 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34881164 |
ccaatccacctggcttgagtatcctattcatctccttgaaaatatcaagaggctttgttaggtagtcaacactgacctgcaagacatattgagttttcaa |
34881263 |
T |
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| Q |
312 |
cctttgaatgactggctttagtat-cctattcatctc |
347 |
Q |
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|||||||||||||||||| ||||| |||||||||||| |
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| T |
34881264 |
cctttgaatgactggcttcagtatccctattcatctc |
34881300 |
T |
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