View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17678_high_9 (Length: 328)
Name: NF17678_high_9
Description: NF17678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17678_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 23605279 - 23604968
Alignment:
| Q |
1 |
atgtcttgtgaagtaaagcttccaatagtttgcttctcatatgaagcttattcttaaaggagattcggtaacacttgagctcgtacatttgaatggcctt |
100 |
Q |
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| T |
23605279 |
atgtcttgtgaagtaaagcttccaatagtttgcttctcatatgaagcttattcttaaaggagattcgggaacacttgagctcgtacatttggatggcctt |
23605180 |
T |
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| Q |
101 |
ttctattattatatctattcaaaaatcaactttgtctactattttgtgacataatctagctactgaaaattcctgcggttgccatgatatatgcnnnnnn |
200 |
Q |
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| T |
23605179 |
ttctattat--tatctattcaaaaatcaactttgtctattattttgtgacataatctaggtactgaaaattcctgcggttgccttgatatatgctttttt |
23605082 |
T |
|
| Q |
201 |
nnnnccttccctaaagaagtaatatagattcttaagccttttataattaaaacaaacatcagattctaaatatgttttattaagattttcaggaataaag |
300 |
Q |
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| T |
23605081 |
tttttcttccctaaagaagtaatatagattcttaagccttttataattaaaacaaacatcagattctaaatatgttttattaagattttcatgaataaag |
23604982 |
T |
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| Q |
301 |
tgaagtgaaaagaa |
314 |
Q |
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| T |
23604981 |
tgaagtgaaaagaa |
23604968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 23577597 - 23577403
Alignment:
| Q |
1 |
atgtcttgtgaagtaaagcttccaatagtttgcttctcatatgaagcttattcttaaaggagattcgg----taacacttgagctcgtacatttgaatgg |
96 |
Q |
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| T |
23577597 |
atgtcttgtgcagtaaagcttccaatagttagcttctcatatgaagcttattcttaaaggagatttggtaactaacagttgagctcgtacatttgcatgg |
23577498 |
T |
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| Q |
97 |
ccttttctattattatatctattcaaaaatcaactttgtctactattttgtgacataatctagctactgaaaattcctgcggttgccatgatatatgc |
194 |
Q |
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| T |
23577497 |
ccttttctatcat--tacctattcaaaaatcagatttgtctactattttgtgacataatataaccactgaaaatttctgc-gttgccatgatatatgc |
23577403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 241 - 314
Target Start/End: Complemental strand, 23619524 - 23619451
Alignment:
| Q |
241 |
ttataattaaaacaaacatcagattctaaatatgttttattaagattttcaggaataaagtgaagtgaaaagaa |
314 |
Q |
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| T |
23619524 |
ttataattaaagctgacatcagattctaaatatgttttattaagattttcgagaataaagtgaagtgaaaagaa |
23619451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 72
Target Start/End: Complemental strand, 23588315 - 23588246
Alignment:
| Q |
3 |
gtcttgtgaagtaaagcttccaatagtttgcttctcatatgaagcttattcttaaaggagattcggtaac |
72 |
Q |
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| T |
23588315 |
gtcttgtgaagaaaagcttacaatagttagcttctcatatgaaacttattcttaaaggagatttggtaac |
23588246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 243 - 314
Target Start/End: Complemental strand, 23577127 - 23577056
Alignment:
| Q |
243 |
ataattaaaacaaacatcagattctaaatatgttttattaagattttcaggaataaagtgaagtgaaaagaa |
314 |
Q |
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| T |
23577127 |
ataattaaagctgacatcagattctaaaaatgttttattatgattttcaacaataaagtgaagtgaaaagaa |
23577056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 103
Target Start/End: Complemental strand, 23584112 - 23584041
Alignment:
| Q |
32 |
gcttctcatatgaagcttattcttaaaggagattcggtaacacttgagctcgtacatttgaatggccttttc |
103 |
Q |
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| T |
23584112 |
gcttctcatatgaagcttattctaaaaggaaattttgtaacctttgagcttgtacatttgaatgaccttttc |
23584041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 74 - 188
Target Start/End: Complemental strand, 23606994 - 23606879
Alignment:
| Q |
74 |
cttgagctcgtacatttgaatggccttttctattattatatctattca-aaaatcaactttgtctactattttgtgacataatc--tagctactgaaaat |
170 |
Q |
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| T |
23606994 |
cttgagctagtacatgtgaacgaccttttctattat--tatctattcataacatcagctttctctactattttgtgacagaatctataacaactgacaat |
23606897 |
T |
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| Q |
171 |
tcctgcggttgccatgat |
188 |
Q |
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| T |
23606896 |
tccttcggttaccatgat |
23606879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 314
Target Start/End: Complemental strand, 23606722 - 23606648
Alignment:
| Q |
240 |
tttataattaaaacaaacatcagattctaaatatgttttattaagattttcaggaataaagtgaagtgaaaagaa |
314 |
Q |
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| T |
23606722 |
tttataattaaagctgacatcagactctgagtatgttttataaggattttcaagaataaagcgaaatgaaaagaa |
23606648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 314
Target Start/End: Complemental strand, 23583873 - 23583798
Alignment:
| Q |
239 |
ttttataattaaaacaaacatcagattctaaatatgtttt-attaagattttcaggaataaagtgaagtgaaaagaa |
314 |
Q |
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||||||||||||| | ||||||||||||| |||||||| || ||||||| || ||||||||||||||||||||| |
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| T |
23583873 |
ttttataattaaagctgacatcagattctatttatgtttttatcaagatttctag-aataaagtgaagtgaaaagaa |
23583798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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