View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17678_low_11 (Length: 321)
Name: NF17678_low_11
Description: NF17678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17678_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 18 - 316
Target Start/End: Complemental strand, 55088421 - 55088126
Alignment:
| Q |
18 |
aacgccaaattaagctttcagttccaatattattgttacacagatctcatatatattcacatgctttctgtcttgaattcaaatcaatcaagaattgatc |
117 |
Q |
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| T |
55088421 |
aacgccaaattaagcattcagttccaatattattgttacacagatctcatatatattcacattctttctgtcttgaattcaaatcaatcaagaattgatc |
55088322 |
T |
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| Q |
118 |
atattaattatgggtgttcgtcttccatttatggttcttcatgcaaacaagatattcaagtcgtcgtcgtcgtcatcatcacatcatctccatagtagaa |
217 |
Q |
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| T |
55088321 |
atattaattatgggtgttcgtcttccatttatggttcttcatgcaaacaagatattcaagtcgtcgtcgtcgtc---atcacatcatctccatagtagaa |
55088225 |
T |
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| Q |
218 |
atcattccaatgttccaaagggccatgtagcagtctatgttggagaggctcaaaagaagcgttttgtggtcccaatatcttacttaaaccacccctcat |
316 |
Q |
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| T |
55088224 |
atcattccaatgttccaaagggccatgtagcagtctatgttggagaggctcaaaagaagcgttttgtggttccaatatcttacttaaaccacccttcat |
55088126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 223 - 302
Target Start/End: Original strand, 27600525 - 27600604
Alignment:
| Q |
223 |
tccaatgttccaaagggccatgtagcagtctatgttggagaggctcaaaagaagcgttttgtggtcccaatatcttactt |
302 |
Q |
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| T |
27600525 |
tccaatgttccaaagggacacatagcagtctacgttggtgagttgcaaaagaaacggtttgtggttccaatatcatactt |
27600604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 308
Target Start/End: Complemental strand, 27479042 - 27478966
Alignment:
| Q |
229 |
gttccaaagggccatgtagcagtctatgttggagaggctcaaaagaagcgttttgtggtcccaatatcttacttaaacca |
308 |
Q |
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| T |
27479042 |
gttccaaagggctatgttgcagtgtatgttggagag---aaacagaagcggtttgttgtcccaatatcatacttgaacca |
27478966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 308
Target Start/End: Complemental strand, 27486102 - 27486026
Alignment:
| Q |
229 |
gttccaaagggccatgtagcagtctatgttggagaggctcaaaagaagcgttttgtggtcccaatatcttacttaaacca |
308 |
Q |
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|||||||||||| |||| ||||| |||||||||||| || ||||||| ||||| ||||||||||| ||||| ||||| |
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| T |
27486102 |
gttccaaagggctatgttgcagtgtatgttggagag---aaacagaagcggtttgttgtcccaatatcatacttgaacca |
27486026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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