View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17678_low_14 (Length: 289)

Name: NF17678_low_14
Description: NF17678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17678_low_14
NF17678_low_14
[»] chr1 (3 HSPs)
chr1 (17-106)||(51252853-51252942)
chr1 (177-252)||(51253079-51253154)
chr1 (134-165)||(51252995-51253026)


Alignment Details
Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 17 - 106
Target Start/End: Original strand, 51252853 - 51252942
Alignment:
Q  17 cactttgtcctggtcaagatgaatgctctcttgccatttacctctctggtttccaacaagttgtgagtgttcatctcttttctaccatct 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51252853 cactttgtcctggtcaagatgaatgctctcttgccatttacctctctggtttccaacaagttgtgagtgttcatctcttttctaccatct 51252942  T

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Target: chr1; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 177 - 252
Target Start/End: Original strand, 51253079 - 51253154
Alignment:
Q  177 ggttctcaccattttctgggtacaatgctcttctcataaaaacaactgtctagcagctacaataacgcttcttttc 252  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51253079 ggttgtcaccattttctgggtacaatgctcttctcataaaaacaactgtctagcagctacaataacgcttcttttc 51253154  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 134 - 165
Target Start/End: Original strand, 51252995 - 51253026
Alignment:
Q  134 ttccgacaccaacatatatgattatattttat 165  Q
    ||||||||||||||||||||||||||||||||    
T  51252995 ttccgacaccaacatatatgattatattttat 51253026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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