View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17678_low_15 (Length: 276)

Name: NF17678_low_15
Description: NF17678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17678_low_15
NF17678_low_15
[»] chr8 (2 HSPs)
chr8 (13-260)||(11662303-11662553)
chr8 (13-174)||(24946679-24946839)
[»] chr1 (2 HSPs)
chr1 (13-260)||(22060730-22060980)
chr1 (13-174)||(25344545-25344707)
[»] chr4 (4 HSPs)
chr4 (11-260)||(19613980-19614232)
chr4 (78-260)||(34722648-34722832)
chr4 (13-188)||(44722128-44722304)
chr4 (26-111)||(10821511-10821592)
[»] chr5 (1 HSPs)
chr5 (78-260)||(30671376-30671561)
[»] chr7 (3 HSPs)
chr7 (13-188)||(43304683-43304859)
chr7 (74-188)||(40354382-40354496)
chr7 (13-69)||(40354581-40354637)
[»] chr6 (1 HSPs)
chr6 (13-172)||(12867224-12867383)
[»] chr3 (2 HSPs)
chr3 (60-176)||(18347841-18347958)
chr3 (13-69)||(18347768-18347824)


Alignment Details
Target: chr8 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 13 - 260
Target Start/End: Complemental strand, 11662553 - 11662303
Alignment:
Q  13 tcatcctcttcggcaagcatcaccagcaatcctctcattggatccgactctctctctatgggtcatcaggtaacatttttgtgtatactcactactactc 112  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| | |||| ||||||||||| ||||||||||||||||||     
T  11662553 tcatcctcttaggcaagcatcaccagcaatcctctcatcggatccgactctctctctatggataatcaagtaacatttttttgtatactcactactactt 11662454  T
Q  113 tgatagtcttttccttctcttcaatagctgaatcaaatagattagaaa-aatgggttttttggtccaattcgtgaaatccatcatcaaagggcactattg 211  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||| ||||||    
T  11662453 tgatagtattttccttctcttcaatagctgaatcagatagattagaaagaatgggttttttggtccaatttgtgaaatccataatcaaagggcgctattg 11662354  T
Q  212 atactatattttggg--tttcttataattttaaatgctactggtagcttat 260  Q
    ||||| || ||||||  |||||||||||||| |||||||||||||||||||    
T  11662353 atactgtaatttgggtttttcttataattttgaatgctactggtagcttat 11662303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 13 - 174
Target Start/End: Original strand, 24946679 - 24946839
Alignment:
Q  13 tcatcctcttcggcaagcatcaccagcaatcctctcattggatccgactctctctctatgggtcatcaggtaacatttttgtgtatactcactactactc 112  Q
    ||||||||| ||||||||||||||| ||||||||  || |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  24946679 tcatcctctccggcaagcatcaccaacaatcctc--atcggatccgactctctctctatgggtcatcaggtaacattttcgtgtatacccactactactc 24946776  T
Q  113 tgatagtcttttccttctcttcaatagctgaatcaaatagattagaaa-aatgggttttttgg 174  Q
    ||| | || ||| |||||||||||| ||||||||||||| |||||||| ||||| ||||||||    
T  24946777 tgacactcatttacttctcttcaatcgctgaatcaaataaattagaaagaatggattttttgg 24946839  T

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Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 13 - 260
Target Start/End: Original strand, 22060730 - 22060980
Alignment:
Q  13 tcatcctcttcggcaagcatcaccagcaatcctctcattggatccgactct--ctctctatgggtcatcaggtaacatttttgtgtatactcactactac 110  Q
    ||||||| ||| |||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  22060730 tcatcctattcagcaagcatcaccagcaatcctctcatcggatccgactctctctctctatgggtcatcaggtaacatttttgtgtatactcactactac 22060829  T
Q  111 tctgatagtcttttccttctcttcaatagctgaatcaaatagattagaaa-aatgggttttttggtccaattcgtgaaatccatcatcaaagggcactat 209  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||| |||||||||||||| | ||||||||| |||||||||| ||||    
T  22060830 tctgatagtcttttcattctcttcaatagctgaatcagatagattagaaagaatggggtttttggtccaatttgcgaaatccatgatcaaagggcgctat 22060929  T
Q  210 tgatactatattttgggtttcttataattttaaatgctactggtagcttat 260  Q
    ||||| | || |||||||||||||||||||| | |||||||||||||||||    
T  22060930 tgatattgtaatttgggtttcttataattttgagtgctactggtagcttat 22060980  T

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Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 13 - 174
Target Start/End: Original strand, 25344545 - 25344707
Alignment:
Q  13 tcatcctcttcggcaagcatcaccagcaatcctctcattggatccgactctctctctatgggtcatcaggtaacatttttgtgtatactcactactactc 112  Q
    ||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||    
T  25344545 tcatcctctccggcaagcatcaccatcaatcctctcatcggatccgactctctctctatgggtcatcaggtaacattttcatgtatacccactactactc 25344644  T
Q  113 tgatagtcttttccttctcttcaatagctgaatcaaatagattagaaa-aatgggttttttgg 174  Q
    ||| |  | ||| |||||||||||| ||| ||||||||| |||||||| ||||| ||||||||    
T  25344645 tgacacccgtttgcttctcttcaatcgctaaatcaaataaattagaaagaatggattttttgg 25344707  T

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Target: chr4 (Bit Score: 170; Significance: 3e-91; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 11 - 260
Target Start/End: Original strand, 19613980 - 19614232
Alignment:
Q  11 catcatcctcttcggcaagcatcaccagcaatcctctcattggatccgactctctctctatgggtcatcaggtaacatttttgtgtatactcactactac 110  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| | |||| ||||||||||| |||||||||||||||||    
T  19613980 catcatcctcttaggcaagcatcaccagcaatcctctcatcggatccgactctctctctatggataatcaagtaacatttttttgtatactcactactac 19614079  T
Q  111 tctgatagtcttttccttctcttcaatagctgaatcaaatagattagaaa-aatgggttttttggtccaattcgtgaaatccatcatcaaagggcactat 209  Q
    | ||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||| ||||    
T  19614080 tttgatagtattttccttctcttcaatagctgaatcagatagattagaaagaatgggttttttggtccaatttgtgaaatccataatcaaagggcgctat 19614179  T
Q  210 tgatactatattttggg--tttcttataattttaaatgctactggtagcttat 260  Q
    ||||||| || ||||||  ||| |||||||||| |||||||||||||||||||    
T  19614180 tgatactgtaatttgggttttttttataattttgaatgctactggtagcttat 19614232  T

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Target: chr4; HSP #2
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 78 - 260
Target Start/End: Original strand, 34722648 - 34722832
Alignment:
Q  78 tcaggtaacatttttgtgtatactcactactactctgatagtcttttccttctcttcaatagctgaatcaaatagattagaaa-aatggg-ttttttggt 175  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||| |||||||||    
T  34722648 tcaggtaacatttttgtgcatactcactactactctgatagtcttttccttctcttcaatagctgaatcagatggattagaaagaatgggtttttttggt 34722747  T
Q  176 ccaattcgtgaaatccatcatcaaagggcactattgatactatattttgggtttcttataattttaaatgctactggtagcttat 260  Q
    | |||| ||||||||||| |||||||||| ||||||||||| || |||||||||||||||||||| |||||||||||||||||||    
T  34722748 ctaatttgtgaaatccatgatcaaagggcgctattgatactgtaatttgggtttcttataattttgaatgctactggtagcttat 34722832  T

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Target: chr4; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 13 - 188
Target Start/End: Complemental strand, 44722304 - 44722128
Alignment:
Q  13 tcatcctcttcggcaagcatcaccagcaatcctctcattggatccgactctctctctatgggtcatcaggtaacatttttgtgtatactcactactactc 112  Q
    ||||||||||||| ||||| ||||| ||||||| ||||||  ||||| ||||||| |||||||||||| |||||||||| ||||||||||||| ||||||    
T  44722304 tcatcctcttcggaaagcagcaccaacaatcctgtcattgactccgattctctctttatgggtcatcaagtaacattttcgtgtatactcactgctactc 44722205  T
Q  113 tgatagtcttttccttctcttcaatagctgaatcaaatagattagaaa-aatgggttttttggtccaattcgtgaaa 188  Q
    ||||| ||||||||||||||||||| | ||||| || ||||||||||| ||||||||| ||||||||||| ||||||    
T  44722204 tgatactcttttccttctcttcaattgttgaatgaattagattagaaagaatgggtttattggtccaatttgtgaaa 44722128  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 26 - 111
Target Start/End: Complemental strand, 10821592 - 10821511
Alignment:
Q  26 caagcatcaccagcaatcctctcattggatccgactctctctctatgggtcatcaggtaacatttttgtgtatactcactactact 111  Q
    |||||| ||||| ||||||||||||||| |||||| || |    |||| |||||||||||||||||  ||||||||||||||||||    
T  10821592 caagcaccaccatcaatcctctcattggctccgacacttt----atggatcatcaggtaacattttcttgtatactcactactact 10821511  T

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Target: chr5 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 78 - 260
Target Start/End: Original strand, 30671376 - 30671561
Alignment:
Q  78 tcaggtaacatttttgtgtatactcactactactctgatagtcttttccttctcttcaatagctgaatcaaatagattagaaa-aatggg--ttttttgg 174  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||  ||||||||    
T  30671376 tcaggtaacatttttgtgcatactcactactactctgatagtcttttccttctcttcaatagctgaatcagatggattagaaagaatgggttttttttgg 30671475  T
Q  175 tccaattcgtgaaatccatcatcaaagggcactattgatactatattttgggtttcttataattttaaatgctactggtagcttat 260  Q
    ||| ||| ||||||||||| |||||||||| ||||||||| | || |||||||||||||||||||| |||||||||||||||||||    
T  30671476 tcctatttgtgaaatccatgatcaaagggcgctattgataatgtaatttgggtttcttataattttgaatgctactggtagcttat 30671561  T

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Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 13 - 188
Target Start/End: Original strand, 43304683 - 43304859
Alignment:
Q  13 tcatcctcttcggcaagcatcaccagcaatcctctcattggatccgactctctctctatgggtcatcaggtaacatttttgtgtatactcactactactc 112  Q
    ||||||||||||| ||||| ||||| ||||||| ||||||  ||||| ||||||| |||||||||||| |||||||||| ||||||||||||| ||||||    
T  43304683 tcatcctcttcggaaagcagcaccaacaatcctgtcattgactccgattctctctttatgggtcatcaagtaacattttcgtgtatactcactgctactc 43304782  T
Q  113 tgatagtcttttccttctcttcaatagctgaatcaaatagattagaaa-aatgggttttttggtccaattcgtgaaa 188  Q
    ||||| ||||||||||||||||||| | ||||| || ||||||||||| ||||||||| ||||||||||| ||||||    
T  43304783 tgatactcttttccttctcttcaattgttgaatgaattagattagaaagaatgggtttattggtccaatttgtgaaa 43304859  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 74 - 188
Target Start/End: Complemental strand, 40354496 - 40354382
Alignment:
Q  74 gtcatcaggtaacatttttgtgtatactcactactactctgatagtcttttccttctcttcaatagctgaatcaaatagattagaaaaatgggttttttg 173  Q
    ||||||| |||| ||||||| ||||||||| ||||||||| ||| | ||||||||||||||| | ||||||| || ||||||||||  |  || ||||||    
T  40354496 gtcatcatgtaatatttttgagtatactcattactactctaatacttttttccttctcttcagtcgctgaattaattagattagaatgaatggatttttg 40354397  T
Q  174 gtccaattcgtgaaa 188  Q
    |||||||| ||||||    
T  40354396 gtccaatttgtgaaa 40354382  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 40354637 - 40354581
Alignment:
Q  13 tcatcctcttcggcaagcatcaccagcaatcctctcattggatccgactctctctct 69  Q
    |||| |||||||||||||||||||| ||||||| |||  || ||||| |||||||||    
T  40354637 tcattctcttcggcaagcatcaccaacaatcctttcaccggctccgattctctctct 40354581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 13 - 172
Target Start/End: Complemental strand, 12867383 - 12867224
Alignment:
Q  13 tcatcctcttcggcaagcatcaccagcaatcctctcattggatccgactctctctctatgggtcatcaggtaacatttttgtgtatactcactactactc 112  Q
    ||||||||| ||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||    
T  12867383 tcatcctctccggcaagcatcaccaacaatcctttcatcggatccgactctctctctatgggtcatcaggtaacattttcgtttatacccactactactc 12867284  T
Q  113 tgatagtcttttccttctcttcaatagctgaatcaaatagattagaaaaatgggtttttt 172  Q
    ||| |  | ||| |||||||||||| ||||||||||||| |||||||| |||| ||||||    
T  12867283 tgacacccgtttgcttctcttcaatcgctgaatcaaataaattagaaagatggatttttt 12867224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 60 - 176
Target Start/End: Original strand, 18347841 - 18347958
Alignment:
Q  60 ctctctctctatgggtcatcaggtaacatttttgtgtatactcactactactctgatagtcttttccttctcttcaatagctgaatcaaatagattagaa 159  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||| ||||||||||||| |||||  ||||||||||||||||||||    
T  18347841 ctctctctctatgggtcatcatgtaacattttcgtgtatactcactactactttgatactcttttccttctcctcaatcactgaatcaaatagattagaa 18347940  T
Q  160 a-aatgggttttttggtc 176  Q
    | |||| |||||||||||    
T  18347941 agaatgagttttttggtc 18347958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 18347768 - 18347824
Alignment:
Q  13 tcatcctcttcggcaagcatcaccagcaatcctctcattggatccgactctctctct 69  Q
    |||||||| |||||||||||||||| |||||||||||| || || || |||||||||    
T  18347768 tcatcctcctcggcaagcatcaccaacaatcctctcatcggctctgattctctctct 18347824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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