View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17678_low_16 (Length: 270)

Name: NF17678_low_16
Description: NF17678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17678_low_16
NF17678_low_16
[»] chr8 (3 HSPs)
chr8 (1-255)||(43654373-43654627)
chr8 (1-46)||(43659007-43659052)
chr8 (4-32)||(38640646-38640674)
[»] chr2 (1 HSPs)
chr2 (1-260)||(8363399-8363658)
[»] chr1 (3 HSPs)
chr1 (1-72)||(47323363-47323434)
chr1 (1-43)||(47326940-47326982)
chr1 (3-32)||(291377-291406)
[»] chr4 (3 HSPs)
chr4 (4-64)||(6799227-6799287)
chr4 (1-58)||(8996051-8996108)
chr4 (1-32)||(42528325-42528356)
[»] chr6 (1 HSPs)
chr6 (1-64)||(27075074-27075137)
[»] chr3 (2 HSPs)
chr3 (1-56)||(32893747-32893802)
chr3 (1-64)||(36611926-36611989)
[»] chr5 (2 HSPs)
chr5 (2-64)||(26050108-26050170)
chr5 (4-43)||(40254959-40254998)
[»] chr7 (1 HSPs)
chr7 (1-57)||(41455349-41455405)


Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 43654373 - 43654627
Alignment:
Q  1 ttgttttgcaggttgtgatccttcagtcatccccgaacaacaatctaaggaattatggttggaggcgattatgaaaatggtaacgagcatgatgatttca 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  43654373 ttgttttgcaggttgtgatccttcagtcatccgcgaacaacaatctaaggaattatggttggagacgattatgacaatggtaacgagcatgatgatttca 43654472  T
Q  101 cttcttcagtatttaccggtgctccggctttgtcgcatacaccacataatttgttgatgttactggtatatacaaatgtggggggtttacattctatttg 200  Q
    |||||||  |||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43654473 cttcttccttatttaccagcgctccggctttgtcgcatacaccacatagtttgttgatgttactggtatatacaaatgtggggggtttacattctatttg 43654572  T
Q  201 taagctaaagagtcaggtaagtctccttagctaatctgcctcaaccgaatatgat 255  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43654573 taagctaaagagtcaggtaagtctccttagctaatctgcctcaaccgaatatgat 43654627  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 43659007 - 43659052
Alignment:
Q  1 ttgttttgcaggttgtgatccttcagtcatccccgaacaacaatct 46  Q
    ||||||||||||||||||||||||||| |||| | |||||||||||    
T  43659007 ttgttttgcaggttgtgatccttcagttatccgcaaacaacaatct 43659052  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 32
Target Start/End: Complemental strand, 38640674 - 38640646
Alignment:
Q  4 ttttgcaggttgtgatccttcagtcatcc 32  Q
    |||||||||||||||||||||||||||||    
T  38640674 ttttgcaggttgtgatccttcagtcatcc 38640646  T

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Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 8363399 - 8363658
Alignment:
Q  1 ttgttttgcaggttgtgatccttcagtcatccccgaacaacaatctaaggaattatggttggaggcgattatgaaaatggtaacgagcatgatgatttca 100  Q
    |||||||||||||||||||||||||| | ||| |    |||||||||||||||||||  |||||  |||||||| ||||||||| || ||||||||||||    
T  8363399 ttgttttgcaggttgtgatccttcagccttccgcatttaacaatctaaggaattatgactggagaagattatgacaatggtaacaagtatgatgatttca 8363498  T
Q  101 cttcttcagtatttaccggtgctccggctttgtcgcatacaccacataatttgttgatgttactggtatatacaaatgtggggggtttacattctatttg 200  Q
    ||||||| | | |||||||  ||| ||||||||||||||||||| ||| |||| ||||||||||||||| ||||||||||| ||||||||||||||||||    
T  8363499 cttcttccgcagttaccggcactcaggctttgtcgcatacaccatatagtttgctgatgttactggtatgtacaaatgtggagggtttacattctatttg 8363598  T
Q  201 taagctaaagagtcaggtaagtctccttagctaatctgcctcaaccgaatatgatctgtg 260  Q
    || |||||||| ||||||||||||||||| |||||||||||||| |||||||||| ||||    
T  8363599 tatgctaaagattcaggtaagtctccttaactaatctgcctcaagcgaatatgatttgtg 8363658  T

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Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 47323363 - 47323434
Alignment:
Q  1 ttgttttgcaggttgtgatccttcagtcatccccgaacaacaatctaaggaattatggttggaggcgattat 72  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||    
T  47323363 ttgttttgcaggttgtgatccttcagtcatccgcgaacaacaatctaaggaattatggctggagacgattat 47323434  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 47326940 - 47326982
Alignment:
Q  1 ttgttttgcaggttgtgatccttcagtcatccccgaacaacaa 43  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  47326940 ttgttttgcaggttgtgatccttctgtcatccgcgaacaacaa 47326982  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 32
Target Start/End: Original strand, 291377 - 291406
Alignment:
Q  3 gttttgcaggttgtgatccttcagtcatcc 32  Q
    ||||||||||||||||||||||||||||||    
T  291377 gttttgcaggttgtgatccttcagtcatcc 291406  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 6799227 - 6799287
Alignment:
Q  4 ttttgcaggttgtgatccttcagtcatccccgaacaacaatctaaggaattatggttggag 64  Q
    ||||||||||||||||||||||||||||| | ||||||||| ||||||||||||| |||||    
T  6799227 ttttgcaggttgtgatccttcagtcatccgcaaacaacaatttaaggaattatggctggag 6799287  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 8996108 - 8996051
Alignment:
Q  1 ttgttttgcaggttgtgatccttcagtcatccccgaacaacaatctaaggaattatgg 58  Q
    |||||||||||| ||||||||||||||||||| |  ||||||||||||||||||||||    
T  8996108 ttgttttgcaggatgtgatccttcagtcatccgcatacaacaatctaaggaattatgg 8996051  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 42528356 - 42528325
Alignment:
Q  1 ttgttttgcaggttgtgatccttcagtcatcc 32  Q
    ||||||||||||||||||||||||||||||||    
T  42528356 ttgttttgcaggttgtgatccttcagtcatcc 42528325  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 27075074 - 27075137
Alignment:
Q  1 ttgttttgcaggttgtgatccttcagtcatccccgaacaacaatctaaggaattatggttggag 64  Q
    ||||||||||||||||||| |||||||||||| |   ||||||||||||||||||||| |||||    
T  27075074 ttgttttgcaggttgtgatacttcagtcatccgcattcaacaatctaaggaattatggctggag 27075137  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 32893747 - 32893802
Alignment:
Q  1 ttgttttgcaggttgtgatccttcagtcatccccgaacaacaatctaaggaattat 56  Q
    |||||||||||||| ||||||||||||||||| | |||||||||||||| ||||||    
T  32893747 ttgttttgcaggttatgatccttcagtcatccgcaaacaacaatctaagaaattat 32893802  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 36611989 - 36611926
Alignment:
Q  1 ttgttttgcaggttgtgatccttcagtcatccccgaacaacaatctaaggaattatggttggag 64  Q
    |||||||||||||||||||||||||||||||  |   |  |||||||||||||||||| |||||    
T  36611989 ttgttttgcaggttgtgatccttcagtcatctgccttccgcaatctaaggaattatggatggag 36611926  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 26050108 - 26050170
Alignment:
Q  2 tgttttgcaggttgtgatccttcagtcatccccgaacaacaatctaaggaattatggttggag 64  Q
    |||||||||||||||||| |||||||||||| |   ||||||||||||||||||||| |||||    
T  26050108 tgttttgcaggttgtgatacttcagtcatccgctttcaacaatctaaggaattatggctggag 26050170  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 43
Target Start/End: Original strand, 40254959 - 40254998
Alignment:
Q  4 ttttgcaggttgtgatccttcagtcatccccgaacaacaa 43  Q
    |||| |||||||||||||||||||||||| ||||||||||    
T  40254959 ttttacaggttgtgatccttcagtcatccgcgaacaacaa 40254998  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 41455405 - 41455349
Alignment:
Q  1 ttgttttgcaggttgtgatccttcagtcatccccgaacaacaatctaaggaattatg 57  Q
    |||||||| ||||| ||||||||||||||||| |   ||||||||||||||||||||    
T  41455405 ttgttttgtaggttatgatccttcagtcatccgcagtcaacaatctaaggaattatg 41455349  T

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