View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17678_low_2 (Length: 818)
Name: NF17678_low_2
Description: NF17678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17678_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-144; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 378 - 673
Target Start/End: Complemental strand, 25157777 - 25157482
Alignment:
| Q |
378 |
acaatacctacgtgccactgtcggctcaaacacctctatataacaactcctttagcatttgaaaatttagttaaaaaattcgcaattgagatgtctagaa |
477 |
Q |
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| T |
25157777 |
acaatatctacatgccactgtcggctcgaacacctctatataacaactcctttagcatttgaaaagttagttaaaaaattcgcaattgagatgtctaaaa |
25157678 |
T |
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| Q |
478 |
aatattttatgttcaaaattctatttctaattttatatttggtcgtagtaatcaccggtagaaaagtaatcattcaaaccaactcaaagtaattgactag |
577 |
Q |
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| T |
25157677 |
aatattctatgttcaaaattctatttctaattttatatttggtcgtagtaatcaccggtagaaaagtaatcattcaaaccaactcaaagtaattgactag |
25157578 |
T |
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| Q |
578 |
gatcaattttacgagttctatgtatcgaatgatcaaatgtcctttgagttgatcaattattcagacttaggtttatattggttctagttttcgaaa |
673 |
Q |
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| T |
25157577 |
gaccaattttacgagttctatgtatggaatgatcaaatatcctttgagttgatcaattattcagacttaggtttatattggttctagttttcgaaa |
25157482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 205 - 383
Target Start/End: Complemental strand, 25159955 - 25159777
Alignment:
| Q |
205 |
ttcataaccacaaccgtcatgaacagtgagctctatctgacacgccggcgaacagaaaggcagcgacacaagaagatcaacacatctgtacttaaggtac |
304 |
Q |
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| T |
25159955 |
ttcataaccacagctgtcatgaacagtgagctctatctgacacgccgacgaacagaaaagcagcgacacatgaagatcaatacatatgtacttaaggtac |
25159856 |
T |
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| Q |
305 |
caaacaccaacaaacgctaccaataagtggaacagcaaaaaacggaactccaaaaccaaaacacccagcattgacaata |
383 |
Q |
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| T |
25159855 |
caaacaccaacaaacgctaccaataagtggaacagcagaaaacggaactccaaaaccaaaacacctagcattgacaata |
25159777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 738 - 802
Target Start/End: Complemental strand, 25157417 - 25157353
Alignment:
| Q |
738 |
acaagttattaacatagatcataaaccaagaaccttaccacaaataaaaatctatttgttaatgt |
802 |
Q |
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| T |
25157417 |
acaagttattaacatagatcataaaccaagaaccttaccacaaataaaaatctatttgttaatgt |
25157353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 593 - 669
Target Start/End: Complemental strand, 25151795 - 25151719
Alignment:
| Q |
593 |
ttctatgtatcgaatgatcaaatgtcctttgagttgatcaattattcagacttaggtttatattggttctagttttc |
669 |
Q |
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| T |
25151795 |
ttctatgtatggaatgattaaatgtccttttagttgatcaattattcagacttaggcttatattggttctagttttc |
25151719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 745 - 798
Target Start/End: Complemental strand, 25151615 - 25151563
Alignment:
| Q |
745 |
attaacatagatcataaaccaagaaccttaccacaaataaaaatctatttgtta |
798 |
Q |
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| T |
25151615 |
attaacatagatcataaaccaagaaccttacaacaaat-aaaatctatttgtta |
25151563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 464 - 520
Target Start/End: Complemental strand, 25151889 - 25151832
Alignment:
| Q |
464 |
tgagatgtctagaaaatattttatgtt-caaaattctatttctaattttatatttggt |
520 |
Q |
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| T |
25151889 |
tgaggtgtctagaaaatattctatgtttcaaaattctatttttaattttatatttggt |
25151832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 144; Significance: 3e-75; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 205 - 372
Target Start/End: Original strand, 34476669 - 34476836
Alignment:
| Q |
205 |
ttcataaccacaaccgtcatgaacagtgagctctatctgacacgccggcgaacagaaaggcagcgacacaagaagatcaacacatctgtacttaaggtac |
304 |
Q |
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|||||||||||||| |||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
34476669 |
ttcataaccacaactgtcatgaacaatgagctctatccgacacgctggcgaacagaaaggcagcgacacaagaagatccacacatctgtacttaaggtac |
34476768 |
T |
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| Q |
305 |
caaacaccaacaaacgctaccaataagtggaacagcaaaaaacggaactccaaaaccaaaacacccag |
372 |
Q |
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| T |
34476769 |
caaacaccaacaaacgctaccaataagtggaacagcagaaaacggaactccaaaaccaaaacacccag |
34476836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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