View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17678_low_21 (Length: 225)
Name: NF17678_low_21
Description: NF17678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17678_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 208
Target Start/End: Original strand, 8484919 - 8485109
Alignment:
| Q |
18 |
agaccagagtaagaacttggaattttattaacgagtaaactgtcagcagatttgtgttctcccgaggccaaaagtacgtgatacattctacagccataaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
8484919 |
agaccagagtaagaacttggaattttattaacgagtaaactgtcagcagatttgtgttctcccgaggccaaaagtgcgtgatacattctacagccataaa |
8485018 |
T |
|
| Q |
118 |
gtaacatcataaggagaaggaaaatattatgagaaagggaaaaaataaatataaaggttagaagcccacctccagtagcaatcttctccat |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8485019 |
gtaacatcataaggagaaggaaaatattatgagaaagggaaaaaataaatataaaggttagaagcccacctccagtagcaatcttctccat |
8485109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 18 - 208
Target Start/End: Original strand, 8489915 - 8490104
Alignment:
| Q |
18 |
agaccagagtaagaacttggaattttattaacgagtaaactgtcagcagatttgtgttctcccgaggccaaaagtacgtgatacattctacagccataaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
8489915 |
agaccagagtaagaacttggaattttattaacgagtaaactgtcagcagatttgtgttctcccgaggccaaaagtgcgtgatacattctacagccataaa |
8490014 |
T |
|
| Q |
118 |
gtaacatcataaggagaaggaaaatattatgagaaagggaaaaaataaatataaaggttagaagcccacctccagtagcaatcttctccat |
208 |
Q |
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| T |
8490015 |
gtaacatcataaggagaaggaaaatattatgagaaagggaaaatat-aatataaaggttagaagcccacctccagtagcaatcttctccat |
8490104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 18 - 208
Target Start/End: Original strand, 8516720 - 8516909
Alignment:
| Q |
18 |
agaccagagtaagaacttggaattttattaacgagtaaactgtcagcagatttgtgttctcccgaggccaaaagtacgtgatacattctacagccataaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
8516720 |
agaccagagtaagaacttggaattttattaacgagtaaactgtcagcagatttgtgttctcccgaggccaaaagtgcgtgatacattctacagccataaa |
8516819 |
T |
|
| Q |
118 |
gtaacatcataaggagaaggaaaatattatgagaaagggaaaaaataaatataaaggttagaagcccacctccagtagcaatcttctccat |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8516820 |
gtaacatcataaggagaaggaaaatattatgagaaagggaaaatat-aatataaaggttagaagcccacctccagtagcaatcttctccat |
8516909 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 58 - 156
Target Start/End: Complemental strand, 1525962 - 1525864
Alignment:
| Q |
58 |
tgtcagcagatttgtgttctcccgaggccaaaagtacgtgatacattctacagccataaagtaacatcataaggagaaggaaaatattatgagaaaggg |
156 |
Q |
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|||||||||||||||| ||||| ||||| ||||| || |||||| ||||||||||||||||| ||||||| ||||||||||||||||| |||||||| |
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| T |
1525962 |
tgtcagcagatttgtgatctcctaaggccgaaagtgcgcaatacatcctacagccataaagtaaaatcataatgagaaggaaaatattataagaaaggg |
1525864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 58 - 196
Target Start/End: Complemental strand, 15171275 - 15171138
Alignment:
| Q |
58 |
tgtcagcagatttgtgttctcccgaggccaaaagtacgtgatacattctacagccataaagtaacatcataaggagaaggaaaatattatgagaaaggga |
157 |
Q |
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|||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||| ||| ||||||||| |
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| T |
15171275 |
tgtcagcagatttgtgatctcctgaggccaaaagtacgtgatacatactacagccataaagtaaaaccataaggagaaggaaaatactataagaaaggga |
15171176 |
T |
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| Q |
158 |
aaaaataaatataaaggttagaagcccacctccagtagc |
196 |
Q |
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|||||| | || |||||||||||||||||||| |||||| |
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| T |
15171175 |
aaaaat-agtacaaaggttagaagcccacctcaagtagc |
15171138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 58 - 196
Target Start/End: Complemental strand, 29712330 - 29712193
Alignment:
| Q |
58 |
tgtcagcagatttgtgttctcccgaggccaaaagtacgtgatacattctacagccataaagtaacatcataaggagaaggaaaatattatgagaaaggga |
157 |
Q |
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|||||||||||||||| || || | |||||||||||| |||||||| ||||| ||||||||||| ||||||||||||||||||||||||| | ||||||| |
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| T |
29712330 |
tgtcagcagatttgtgatcacctgtggccaaaagtacttgatacatactacaaccataaagtaaaatcataaggagaaggaaaatattataataaaggga |
29712231 |
T |
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| Q |
158 |
aaaaataaatataaaggttagaagcccacctccagtagc |
196 |
Q |
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|||||| | ||| ||||||||||||||||||| |||||| |
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| T |
29712230 |
aaaaat-agtatgaaggttagaagcccacctcaagtagc |
29712193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 4e-37; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 58 - 196
Target Start/End: Original strand, 55803123 - 55803260
Alignment:
| Q |
58 |
tgtcagcagatttgtgttctcccgaggccaaaagtacgtgatacattctacagccataaagtaacatcataaggagaaggaaaatattatgagaaaggga |
157 |
Q |
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|||||||||||||||| ||||| | |||||||||||| | |||||| ||||| ||||||||||| ||||||||||||||||||||||||| | ||||||| |
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| T |
55803123 |
tgtcagcagatttgtgatctcctgcggccaaaagtactttatacatactacaaccataaagtaaaatcataaggagaaggaaaatattataataaaggga |
55803222 |
T |
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| Q |
158 |
aaaaataaatataaaggttagaagcccacctccagtagc |
196 |
Q |
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|||||| | ||| ||||||||||||||||||| |||||| |
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| T |
55803223 |
aaaaat-agtatgaaggttagaagcccacctcaagtagc |
55803260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 58 - 196
Target Start/End: Original strand, 55807711 - 55807848
Alignment:
| Q |
58 |
tgtcagcagatttgtgttctcccgaggccaaaagtacgtgatacattctacagccataaagtaacatcataaggagaaggaaaatattatgagaaaggga |
157 |
Q |
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|||||||||||||||| |||| | |||||||||||| |||||||| ||||| ||||||||||| ||||||||||||||||||||||||| | ||||||| |
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| T |
55807711 |
tgtcagcagatttgtgatctcttgtggccaaaagtacttgatacatactacaaccataaagtaaaatcataaggagaaggaaaatattataataaaggga |
55807810 |
T |
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| Q |
158 |
aaaaataaatataaaggttagaagcccacctccagtagc |
196 |
Q |
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|||||| | || ||||||||||||||||||| |||||| |
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| T |
55807811 |
aaaaat-agcatgaaggttagaagcccacctcaagtagc |
55807848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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