View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17678_low_7 (Length: 387)
Name: NF17678_low_7
Description: NF17678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17678_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 11 - 317
Target Start/End: Original strand, 25501577 - 25501882
Alignment:
| Q |
11 |
gcaaaggagaaaaggggagaaaagagttttcgnnnnnnnttataaagtttaccattggagggagactttcattttagaccccaaaattgggcatattaca |
110 |
Q |
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|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
25501577 |
gcaaaggagaaaaggggagaaaagagttttcgaaaaaaattatagagtttaccattggagggagactttcattttagaccccaaaattgggcatatgaca |
25501676 |
T |
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| Q |
111 |
tgataaccccatcaa---gtccacttggagttgaacagggcgtttagtggccatatcagcagttgagactgtgtcaggtcaagagattataaatagacta |
207 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25501677 |
tgataaccccatcaacaagtccacttggagttgaacagggcgtttagtggccatatcagcagttgagactgtgtcaggtcaagagattataaatagacta |
25501776 |
T |
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| Q |
208 |
acttgagtactcgaagttattttaaatttgtgaccttagatactaatttgagaccgcctatatatatagtcaaagaccaatttggtgatttcctcctaaa |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
25501777 |
acttgagtactcgaagttattttaaatttgtgaccttagatactaatttgagaccgcc----tatatagtcaaagaccaatttggtgatttcctcctaaa |
25501872 |
T |
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| Q |
308 |
cacaccctta |
317 |
Q |
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|||||||||| |
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| T |
25501873 |
cacaccctta |
25501882 |
T |
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