View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17679_high_2 (Length: 378)
Name: NF17679_high_2
Description: NF17679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17679_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 8 - 361
Target Start/End: Complemental strand, 45281396 - 45281051
Alignment:
| Q |
8 |
gacatcatcaaggtcctctctctcatcggatcccagtccaatgttgtcccatcctaatccactcataggtgtctaaggaggtagttgtctcggctagagt |
107 |
Q |
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| T |
45281396 |
gacatcatcaaggtcctctctctcatcggatccaagtccaatgttgtcccatcctaatccactcataggtgtctaaggaggtaattatctcggctagagt |
45281297 |
T |
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| Q |
108 |
tttggatagtaaaaccctaatctcactctacgaaaggctaactcatggcatccatacacacttttctaacttaaaaacgtcatattttgcacattcttac |
207 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45281296 |
tttggatagtaaaaccctaatctcactctacgaa-ggctaactcatggcatccatacacacttttctaacttaaaaacgtcatattttgcacattcttac |
45281198 |
T |
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| Q |
208 |
ttaacaggtccatcatcatgtaatcagaggagttgttcaacgctcaccaccttcatcccataacaaccactcaggccagggatattaggtcgtattaaca |
307 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45281197 |
ttaacaggtacatcatcatgtaatcagaggagttgttcaacgctcaccaccttcatcccataacaaccactcaggccagggatattaggtcgtattaaca |
45281098 |
T |
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| Q |
308 |
tgtgttgggccggtataaattttataaatttgattttattggttggccatagtt |
361 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
45281097 |
tgtgttgggccggta-------tataaatttgattttattggttggccatagtt |
45281051 |
T |
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