View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17679_low_1 (Length: 456)

Name: NF17679_low_1
Description: NF17679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17679_low_1
NF17679_low_1
[»] chr8 (2 HSPs)
chr8 (33-424)||(27513835-27514224)
chr8 (57-203)||(8674890-8675040)
[»] chr1 (4 HSPs)
chr1 (155-442)||(39209624-39209911)
chr1 (33-128)||(39209906-39210001)
chr1 (57-200)||(24037047-24037194)
chr1 (250-297)||(24037276-24037323)
[»] chr3 (1 HSPs)
chr3 (255-297)||(9460971-9461013)


Alignment Details
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 33 - 424
Target Start/End: Original strand, 27513835 - 27514224
Alignment:
Q  33 tcaaaacaacaacagccatccagtgagagagagtgaacctcttcaccgagctcgatagctctttcaataacagcatcgcgagctttcgacttagcacgtt 132  Q
    ||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||| |||    
T  27513835 tcaaaacaacaacagccattcagtgagagagag--aacctcttcaccgagctcgatagctctttcaatagtagcatcgtgagctttcgacttagcatgtt 27513932  T
Q  133 tctaaaacttcttttgaagagtttagcatgaatttcagatcgtttttctttgttcttactcatcgaaggacagagcagttccttcatttcggtttccgtc 232  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||  ||| | ||||    
T  27513933 tctaaaacttcttctgacgagtttagcatgaatttcagatcgtttttctttgttcttactcatcggaggacggagcggttccttcattctggtcttcgtc 27514032  T
Q  233 tctgttctggttttttctgcggttcctcttcccaccgaaagccaattagaaggtttgggaaggtttcacaatttgaacagacggaatttgaaaaatcaga 332  Q
    ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  27514033 tcctttctggttttttctgcggttcctcttcccaccgaaagccaattagaaggtttgggaaggtttcacaatttgaacagacagaatttgaaaaatcaga 27514132  T
Q  333 gaagaaagggaagaagattggatggtggcaaggagaaggaggtgagggaaaggacgataaagaaggggaaaacagtgtgagggagaagacac 424  Q
    ||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27514133 gaacaaagagaagaagatcggatggtggcaaggagaaggaggtgagggaaaggacgataaagaaggggaaaacagtgtgagggagaagacac 27514224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 57 - 203
Target Start/End: Complemental strand, 8675040 - 8674890
Alignment:
Q  57 gagagagagtgaacctcttcaccgagctcgatagctctttcaataacagcatcgcgagctttcgacttagcacgtttctaaaacttcttttga----aga 152  Q
    |||||||||||||||||||||||||||||||||||||||| || | ||||||| ||||| || |||||||| ||||| | || |||||| |||     ||    
T  8675040 gagagagagtgaacctcttcaccgagctcgatagctcttttaacagcagcatcacgagcattagacttagcgcgtttttcaagcttcttctgatgcttga 8674941  T
Q  153 gtttagcatgaatttcagatcgtttttctttgttcttactcatcgaaggac 203  Q
    |||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  8674940 gtttagcatgaatttcagatcgtttttctttgttcttaatcattgaaggac 8674890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 155 - 442
Target Start/End: Complemental strand, 39209911 - 39209624
Alignment:
Q  155 ttagcatgaatttcagatcgtttttctttgttcttactcatcgaaggacagagcagttccttcatttcggtttccgtctctgttctggttttttctgcgg 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  39209911 ttagcatgaatttcagatcgtttttctttgttcttactcatcgaaggacggagcagttccttcatttcggtttccgtcactgttctggttttttctgcgg 39209812  T
Q  255 ttcctcttcccaccgaaagccaattagaaggtttgggaaggtttcacaatttgaacagacggaatttgaaaaatcagagaagaaagggaagaagattgga 354  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39209811 ttcctcttcccaccgaaagccaattagaaggtttgggaaggtttcacaatttgaacagacggaatttgaaaaatcagagaagaaagggaagaagattgga 39209712  T
Q  355 tggtggcaaggagaaggaggtgagggaaaggacgataaagaaggggaaaacagtgtgagggagaagacacctttatgttggtggtgat 442  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39209711 tggtggcaaggagaaggaggtgaggggaaggacgataaagaaggggaaaacagtgtgagggagaagacacctttatgttggtggtgat 39209624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 33 - 128
Target Start/End: Complemental strand, 39210001 - 39209906
Alignment:
Q  33 tcaaaacaacaacagccatccagtgagagagagtgaacctcttcaccgagctcgatagctctttcaataacagcatcgcgagctttcgacttagca 128  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  39210001 tcaaaacaacaacatccattcagtgagagagagtgaacctcttcaccgagctcgatagctctttcaatagcagcatcgcgagctttcgacttagca 39209906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 57 - 200
Target Start/End: Original strand, 24037047 - 24037194
Alignment:
Q  57 gagagagagtgaacctcttcaccgagctcgatagctctttcaataacagcatcgcgagctttcgacttagcacgtttctaaaacttcttttga----aga 152  Q
    ||||||||| ||||||||||||||| ||||||||| |||| || | || ||||||||||||||||||||||  |||||| || |||||| |||     ||    
T  24037047 gagagagagcgaacctcttcaccgatctcgatagcgcttttaacagcaacatcgcgagctttcgacttagcgtgtttctcaagcttcttctgacgcttga 24037146  T
Q  153 gtttagcatgaatttcagatcgtttttctttgttcttactcatcgaag 200  Q
    |||||||||||||||||||||||||| |||| |||||| |||||||||    
T  24037147 gtttagcatgaatttcagatcgttttccttttttcttaatcatcgaag 24037194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 297
Target Start/End: Original strand, 24037276 - 24037323
Alignment:
Q  250 tgcggttcctcttcccaccgaaagccaattagaaggtttgggaaggtt 297  Q
    |||| ||||||||||||||||||||| || | ||||||||||||||||    
T  24037276 tgcgcttcctcttcccaccgaaagccgatcataaggtttgggaaggtt 24037323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 255 - 297
Target Start/End: Complemental strand, 9461013 - 9460971
Alignment:
Q  255 ttcctcttcccaccgaaagccaattagaaggtttgggaaggtt 297  Q
    ||||| |||||||||||||||||| ||||||||||||||||||    
T  9461013 ttcctgttcccaccgaaagccaatcagaaggtttgggaaggtt 9460971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University