View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17679_low_3 (Length: 322)
Name: NF17679_low_3
Description: NF17679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17679_low_3 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 14 - 322
Target Start/End: Original strand, 28430957 - 28431265
Alignment:
| Q |
14 |
ctaacaacaatttattattgtgtgagctgtggccattttatttaacaaatgaaatgacatgtattaatttgtggatatattttttcttcttgtcttaaca |
113 |
Q |
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| T |
28430957 |
ctaacaacaatttattattgtgtgagctgtggccattttatttaacaaatgaaatgacatgtattaatttgtggatatattttttcttcttgtcttaaca |
28431056 |
T |
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| Q |
114 |
ttattcatttttccctgcaggcagttgacattaaactccttggatcccttaatagagacgacttaaagaaaatttgtggtgaaaatttacctgaatggat |
213 |
Q |
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| T |
28431057 |
ttattcatttttccctgcaggcagttgacattaaactccttggatcccttaatagagacgacttaaagaaaatttgtggtgaaaatttacctgaatggat |
28431156 |
T |
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| Q |
214 |
atctttccctgtatatgagcaggtgtgattatgatctgttgttgtggctcttagccttacactgaaatgattttacaaacgatcctatcataggcattgg |
313 |
Q |
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| T |
28431157 |
atctttccctgtatatgagcaggtgtgattatgatctgttgttgtggctcttagccttacactgaaatgattttacaaacgatcctatcataggcattgg |
28431256 |
T |
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| Q |
314 |
caatgcatc |
322 |
Q |
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| T |
28431257 |
caatgcatc |
28431265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 132 - 238
Target Start/End: Complemental strand, 12973656 - 12973550
Alignment:
| Q |
132 |
aggcagttgacattaaactccttggatcccttaatagagacgacttaaagaaaatttgtggtgaaaatttacctgaatggatatctttccctgtatatga |
231 |
Q |
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| T |
12973656 |
aggctgttgacatcaaaatccttggatccctcaacagagaagatttaaagaaaatttgtggggagaatcttcctgaatggatatcttttcctgtatatga |
12973557 |
T |
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| Q |
232 |
gcaggtg |
238 |
Q |
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| T |
12973556 |
gcaggtg |
12973550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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