View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17679_low_4 (Length: 254)
Name: NF17679_low_4
Description: NF17679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17679_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 35801369 - 35801193
Alignment:
| Q |
18 |
aaaaatgtgactatcaatacactggaaattgaaatttttaacttttaaaataagttgattggaataacttctttattatttagaatccttaaaaagtttt |
117 |
Q |
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| T |
35801369 |
aaaaatgtgactatcaatacactggaatttaaaatttttaacttttaaaataagttgattggaataacttctttattatttagaatccttaaaaagtttt |
35801270 |
T |
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| Q |
118 |
taggacactcgtnnnnnnnnctctaattctaaatataattacacatttttggaaattattacttcaaaaatacaatt |
194 |
Q |
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|||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
35801269 |
taggacactcgtaagaaaaactctaattctaaatatcattacacatttttggaaattattacttcaaaaatacaatt |
35801193 |
T |
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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 94
Target Start/End: Original strand, 35438069 - 35438132
Alignment:
| Q |
31 |
tcaatacactggaaattgaaatttttaacttttaaaataagttgattggaataacttctttatt |
94 |
Q |
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||||| || ||||||| ||||| |||||||||| |||||| | |||||||||||||||||||| |
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| T |
35438069 |
tcaatgcattggaaatcgaaatgtttaactttttaaataaatgcattggaataacttctttatt |
35438132 |
T |
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