View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1767_high_6 (Length: 377)
Name: NF1767_high_6
Description: NF1767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1767_high_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 20 - 363
Target Start/End: Original strand, 14545615 - 14545952
Alignment:
| Q |
20 |
gaagaaaggtaaaccctaatacatccacatcacacagatacacacacataccctctttctatgcgtgtgcagnnnnnnnnnnnnnggtcaaattttgtgt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
14545615 |
gaagaaaggtaaaccctaatacatccacatcacacagatatacacacataccctctttctatgcgtgtgcagtttttttgtttttggtcaaattttgtgt |
14545714 |
T |
|
| Q |
120 |
gcagttataacgtgagttttatggaatgcttttcagatttcactgttaaaccgtaatgtaatctgtgatagtttgatattgttataagaaaagtttgtgg |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
14545715 |
tcagttataacgtgagttttatggaatgcttttcagatttcactgttaaaccgtaatgtaatctgtgatagtttgattttgttataagaaaagtttgtgg |
14545814 |
T |
|
| Q |
220 |
tgtttggtcattcaatttcaaacctttcttcttttacagttacacgggtctttaattacactagcctctttactctagagatttttgtcttgtttgtact |
319 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14545815 |
tgtttggtcattca------aacctttcttcatttacagttacacgggtctttaattacactagcctctttactctagagatttttgtcttgtttgtact |
14545908 |
T |
|
| Q |
320 |
tttgagttttgagtagttagcatcactactcagacttcatttct |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14545909 |
tttgagttttgagtagttagcatcactactcagacttcatttct |
14545952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University