View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1767_high_9 (Length: 320)
Name: NF1767_high_9
Description: NF1767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1767_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 15 - 306
Target Start/End: Complemental strand, 43662693 - 43662400
Alignment:
| Q |
15 |
agttatgatgtattgatgatgtgatagaataa--gagataaagcgaaaataagatagtgaaagaatgtatgataattaaggatgtaaaaataccattacc |
112 |
Q |
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| T |
43662693 |
agttatgatgtattgatgatgtgatagaacaatagagataaagcgaaaataagatagtgaaagaatgtataataattaagggtgtaaaaataccattacc |
43662594 |
T |
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| Q |
113 |
ctttttatgaatctatgctcatgtgatcggaaccgatctcttatacatagacactttcaattttcctataaatattcaacacattatcttctctctgtca |
212 |
Q |
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| T |
43662593 |
ttttttgtgaatctatgctcatgtgatcggaaccgatctcttatacatagacactctcaattttcctacaaatatttaacacattatcttctctctatca |
43662494 |
T |
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| Q |
213 |
cttagtttctattataaacatatcacacaactctttatgtttgtttctcactcaaagtgttgaataggtgtacatatcattttcctttctctat |
306 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
43662493 |
cttagtttctattataaacatatcacaccactctttatgtttgtttctctctcaaagtgttgaataggtgtacagatcattttcctttctctat |
43662400 |
T |
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