View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1767_low_3 (Length: 486)
Name: NF1767_low_3
Description: NF1767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1767_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 16 - 470
Target Start/End: Original strand, 46799493 - 46799945
Alignment:
| Q |
16 |
ataacgtgtgaaactg-tgtgttgttgtaaaatcatgtacaaagcctctattataataatcgtgacttagtcaagagtttgcacattaggctggctgaaa |
114 |
Q |
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| T |
46799493 |
ataacgtgtgaaacttatgtgttgttgtaaaatcatgtacaaagcctctattgtaataatcgtgacttagtcaagagtttgcacattaggctggctgaaa |
46799592 |
T |
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| Q |
115 |
atgagagctcaagcgtatggtgtttatttcctctcttttcattccctttaatattccatctaaatcactatatacatgaagatatttaactttgggatta |
214 |
Q |
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| T |
46799593 |
atgagagttcaagcgaatggtgtttatttcctctcttttcattccctttaatattccatctaaatcactatatacatgaagatattt-attttgagattt |
46799691 |
T |
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| Q |
215 |
tagaataactagtttgtgagaattttataagtattttaagataagagtaaaattttaaaaatatttaaaagaatactgtttatgattaaagaatgtatat |
314 |
Q |
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| T |
46799692 |
tagaataactagtttgtgagaattttataagtattttaagataagagtaaaattttaaaaatatttaaaagaatactgtttatgattaaagaatgtatat |
46799791 |
T |
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| Q |
315 |
ataattaattaagtaaaattttaaagaatgtaaatatgcacaacccttnnnnnnnntgaaaatatgcacaactaataattcaaaagataacgtatactat |
414 |
Q |
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| T |
46799792 |
ataattaattaagtaaaattttaaagaatgtaaatatgcacaaccctt--aaaaaatgaaaatatgcacaactaataattcaaaagataacgtatactat |
46799889 |
T |
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| Q |
415 |
agaacttctagaattaagtttgtttgaatgatggatttaacatgaaccccataaat |
470 |
Q |
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| T |
46799890 |
agaacttctagaattaagtttgtttgaatgatggatttaacatgaaccccataaat |
46799945 |
T |
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