View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1767_low_4 (Length: 422)

Name: NF1767_low_4
Description: NF1767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1767_low_4
NF1767_low_4
[»] chr4 (25 HSPs)
chr4 (62-413)||(44885420-44885772)
chr4 (3-64)||(43242369-43242430)
chr4 (1-55)||(44892542-44892596)
chr4 (1-40)||(16691033-16691072)
chr4 (1-64)||(44890614-44890677)
chr4 (1-43)||(4219654-4219696)
chr4 (1-43)||(12234426-12234468)
chr4 (1-43)||(15523640-15523682)
chr4 (1-43)||(22170343-22170385)
chr4 (1-43)||(33109781-33109823)
chr4 (1-42)||(43281198-43281239)
chr4 (1-45)||(45082528-45082571)
chr4 (3-43)||(46193811-46193851)
chr4 (1-43)||(2118702-2118743)
chr4 (1-43)||(11153553-11153595)
chr4 (1-43)||(12503842-12503884)
chr4 (1-43)||(22434584-22434625)
chr4 (1-43)||(25447642-25447684)
chr4 (1-43)||(38962225-38962267)
chr4 (1-43)||(43243687-43243728)
chr4 (1-43)||(44220783-44220825)
chr4 (1-43)||(48713752-48713794)
chr4 (1-43)||(51020894-51020936)
chr4 (3-40)||(23494542-23494579)
chr4 (1-42)||(48526293-48526333)
[»] chr2 (15 HSPs)
chr2 (1-64)||(35779805-35779868)
chr2 (1-64)||(8972334-8972397)
chr2 (1-45)||(26538194-26538238)
chr2 (1-43)||(239449-239491)
chr2 (1-43)||(8425766-8425808)
chr2 (1-43)||(11090618-11090660)
chr2 (1-43)||(20444846-20444888)
chr2 (1-43)||(22374417-22374459)
chr2 (1-43)||(35781069-35781111)
chr2 (1-43)||(40815751-40815793)
chr2 (1-64)||(20440417-20440479)
chr2 (1-43)||(14432239-14432281)
chr2 (1-43)||(15551596-15551638)
chr2 (1-43)||(18451237-18451279)
chr2 (1-43)||(43058430-43058472)
[»] scaffold0168 (1 HSPs)
scaffold0168 (1-43)||(7694-7736)
[»] chr3 (23 HSPs)
chr3 (1-43)||(25612383-25612425)
chr3 (1-43)||(51474739-51474782)
chr3 (1-43)||(5137077-5137119)
chr3 (1-43)||(22425219-22425261)
chr3 (3-45)||(23228412-23228454)
chr3 (1-43)||(23644559-23644601)
chr3 (1-43)||(24300962-24301004)
chr3 (1-43)||(25853633-25853675)
chr3 (1-43)||(32697107-32697148)
chr3 (1-43)||(37727026-37727068)
chr3 (1-43)||(41046797-41046839)
chr3 (1-43)||(43973538-43973580)
chr3 (1-43)||(48453086-48453128)
chr3 (2-43)||(39555983-39556024)
chr3 (1-43)||(23227353-23227395)
chr3 (1-43)||(27393983-27394025)
chr3 (1-43)||(31779058-31779100)
chr3 (1-43)||(32535365-32535406)
chr3 (1-43)||(37220654-37220696)
chr3 (1-43)||(50116815-50116857)
chr3 (1-42)||(25420548-25420589)
chr3 (1-42)||(26837763-26837804)
chr3 (1-37)||(20840657-20840693)
[»] chr1 (14 HSPs)
chr1 (1-43)||(15646601-15646643)
chr1 (1-43)||(5540224-5540266)
chr1 (1-43)||(5962984-5963026)
chr1 (1-43)||(9019070-9019112)
chr1 (1-43)||(15173193-15173235)
chr1 (1-43)||(18984216-18984258)
chr1 (1-43)||(29307050-29307092)
chr1 (1-43)||(33144325-33144367)
chr1 (1-43)||(50970684-50970726)
chr1 (1-43)||(17433313-17433355)
chr1 (1-43)||(29869717-29869759)
chr1 (1-43)||(39154116-39154158)
chr1 (1-43)||(52268387-52268429)
chr1 (158-199)||(941394-941435)
[»] chr5 (15 HSPs)
chr5 (1-46)||(4624628-4624673)
chr5 (1-43)||(5819335-5819377)
chr5 (1-43)||(8647535-8647577)
chr5 (1-43)||(19359233-19359275)
chr5 (1-43)||(24362242-24362284)
chr5 (1-43)||(29455148-29455190)
chr5 (1-42)||(4219760-4219800)
chr5 (1-43)||(2865161-2865203)
chr5 (1-43)||(13814134-13814175)
chr5 (1-43)||(18183375-18183417)
chr5 (1-43)||(24361934-24361976)
chr5 (1-42)||(164598-164639)
chr5 (1-42)||(8461027-8461068)
chr5 (3-43)||(14463927-14463966)
chr5 (3-43)||(25000189-25000229)
[»] scaffold0273 (1 HSPs)
scaffold0273 (1-45)||(4611-4655)
[»] chr7 (13 HSPs)
chr7 (3-42)||(28583538-28583577)
chr7 (1-43)||(19830517-19830559)
chr7 (1-43)||(37786864-37786906)
chr7 (1-43)||(38161048-38161090)
chr7 (1-42)||(4641537-4641578)
chr7 (1-42)||(34534198-34534239)
chr7 (1-43)||(2659246-2659288)
chr7 (1-43)||(19590622-19590664)
chr7 (1-43)||(23953135-23953177)
chr7 (1-43)||(28584328-28584370)
chr7 (1-43)||(29100257-29100299)
chr7 (1-43)||(32005020-32005062)
chr7 (1-43)||(38858740-38858782)
[»] scaffold1223 (1 HSPs)
scaffold1223 (1-43)||(849-891)
[»] scaffold0951 (1 HSPs)
scaffold0951 (1-43)||(1764-1806)
[»] scaffold0295 (1 HSPs)
scaffold0295 (1-43)||(4890-4932)
[»] scaffold0057 (1 HSPs)
scaffold0057 (7-57)||(61850-61900)
[»] scaffold0019 (1 HSPs)
scaffold0019 (1-43)||(134079-134121)
[»] chr8 (12 HSPs)
chr8 (1-43)||(19176696-19176738)
chr8 (1-43)||(31133317-31133359)
chr8 (1-43)||(33743325-33743367)
chr8 (1-42)||(11656552-11656593)
chr8 (1-41)||(9930065-9930105)
chr8 (1-45)||(44831649-44831693)
chr8 (1-43)||(4630198-4630240)
chr8 (1-43)||(13224737-13224779)
chr8 (1-43)||(33328255-33328297)
chr8 (1-43)||(41681231-41681272)
chr8 (1-43)||(43958282-43958324)
chr8 (1-42)||(10918223-10918264)
[»] chr6 (17 HSPs)
chr6 (1-43)||(10900336-10900378)
chr6 (1-43)||(11276988-11277030)
chr6 (1-43)||(15828047-15828089)
chr6 (1-43)||(18296242-18296283)
chr6 (1-43)||(20741197-20741239)
chr6 (1-43)||(31470722-31470764)
chr6 (1-42)||(1149839-1149880)
chr6 (5-40)||(3835135-3835170)
chr6 (1-43)||(2319769-2319811)
chr6 (1-43)||(18257234-18257276)
chr6 (1-39)||(18505329-18505367)
chr6 (1-43)||(28472734-28472775)
chr6 (1-43)||(29859923-29859964)
chr6 (6-43)||(23074090-23074127)
chr6 (1-41)||(2322626-2322666)
chr6 (1-45)||(11445084-11445128)
chr6 (1-45)||(12935561-12935605)
[»] scaffold0157 (1 HSPs)
scaffold0157 (1-43)||(16593-16635)
[»] scaffold0007 (1 HSPs)
scaffold0007 (1-43)||(64399-64441)
[»] scaffold0432 (1 HSPs)
scaffold0432 (1-42)||(10280-10320)
[»] scaffold0417 (1 HSPs)
scaffold0417 (2-42)||(10719-10759)


Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 62 - 413
Target Start/End: Complemental strand, 44885772 - 44885420
Alignment:
Q  62 tactcgaagattttctaatttgtttctgagtgagacaagaaagaaaatatttgaattcaatttt-aacgtgaataaatgaggtatttaaagtccgaactc 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||    
T  44885772 tactcgaagattttctaatttgtttctgagtgagacaagaaagaaaatatttgaattcattttttaacgtgaataaatgaggtatttaaagtccaaactc 44885673  T
Q  161 aacctctgtatataacaatgtattgtctatgtcaactgatctatgattatatataactctcgaatatgaaataactcaaaaggctttgaaggatataaga 260  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  44885672 aacctctatatataacaatgtattgtctctgtcaactgatctatgattgtatataactctcgaatatgaaataactcaaaaggctttgaaggatttaaga 44885573  T
Q  261 ggcctttgaaaatttccaaactattttcctccttctgtaatactcttaaacaaaaagaaagtattagctaaaaaatttcctcttctctcttccaaaaaca 360  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||    
T  44885572 ggcctttgaaaatttccaaactattttcctccttctgtaatactcttaaacaaaaagaaagtattagctaaattttttcctcttctctcttccaaaaaca 44885473  T
Q  361 cttattttgagaattattctctatttctatttcctaccttcccttccctttgc 413  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44885472 cttattttgagaattattctctatttctatttcctaccttcccttccctttgc 44885420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 43242369 - 43242430
Alignment:
Q  3 ttgcatttttcgtcctacccccaattttatcctccaaaaacactaatatggcaaagtaatac 64  Q
    ||||||||||||||||||| ||||||||||| ||||||||| || ||||||||||| |||||    
T  43242369 ttgcatttttcgtcctacctccaattttatcatccaaaaacgctgatatggcaaagaaatac 43242430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 44892596 - 44892542
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaacactaatatggca 55  Q
    |||||||||||||||||||||| | |||||||||||||||||| || ||||||||    
T  44892596 tgttgcatttttcgtcctaccctccattttatcctccaaaaacgctgatatggca 44892542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 16691033 - 16691072
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaa 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  16691033 tgttgcatttttcgtcctacccccgattttatcctccaaa 16691072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 44890614 - 44890677
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaacactaatatggcaaagtaatac 64  Q
    ||||||||||||| || ||||||| ||||||||||| |||||| || ||||||||||| |||||    
T  44890614 tgttgcatttttcatcataccccccattttatcctcaaaaaacgctgatatggcaaagaaatac 44890677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 4219654 - 4219696
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  4219654 tgttgcatttttcgtcctaccccccattttattctccaaaaac 4219696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 12234426 - 12234468
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  12234426 tgttgcatttttcgtcctaccccccattttattctccaaaaac 12234468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 15523682 - 15523640
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  15523682 tgttgcatttttcgtcctaccccccattttattctccaaaaac 15523640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 22170385 - 22170343
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  22170385 tgttgcatttttcgtcctaccccccattttattctccaaaaac 22170343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 33109781 - 33109823
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  33109781 tgttgcatttttcgtcctaccccccattttattctccaaaaac 33109823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 43281239 - 43281198
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaa 42  Q
    |||||||||||||||||||||||| ||||||||||| |||||    
T  43281239 tgttgcatttttcgtcctaccccccattttatcctcaaaaaa 43281198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 45082528 - 45082571
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaacac 45  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||    
T  45082528 tgttgcatttttcgtcctaccccc-attttattctccaaaaacac 45082571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 46193851 - 46193811
Alignment:
Q  3 ttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||||||||| ||||||| ||||||||||    
T  46193851 ttgcatttttcgtcctaccccccattttattctccaaaaac 46193811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 2118743 - 2118702
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  2118743 tgttgcatttttcgtcctaccccc-attttattctccaaaaac 2118702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 11153595 - 11153553
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||||||||| | ||||||| ||||||||||    
T  11153595 tgttgcatttttcgtcctaccctccattttattctccaaaaac 11153553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 12503884 - 12503842
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||| ||||||| ||||||| ||||||||||    
T  12503884 tgttgcatttttcgtcataccccccattttattctccaaaaac 12503842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 22434625 - 22434584
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  22434625 tgttgcatttttcgtcctaccccc-attttattctccaaaaac 22434584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 25447684 - 25447642
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||||||||| | ||||||| ||||||||||    
T  25447684 tgttgcatttttcgtcctaccctccattttattctccaaaaac 25447642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 38962267 - 38962225
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||||||||||| ||||||| || |||||||    
T  38962267 tgttgcatttttcgtcctaccccccattttattcttcaaaaac 38962225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 43243728 - 43243687
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||| ||||||||||| ||||||||||||||||||    
T  43243728 tgttgcattttttgtcctaccccc-attttatcctccaaaaac 43243687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 44220825 - 44220783
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||| |||||||||| ||||||| |||||||||||||||||||    
T  44220825 tgtttcatttttcgttctacccctaattttatcctccaaaaac 44220783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 48713794 - 48713752
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||||| ||| | ||||||||||||||||||    
T  48713794 tgttgcatttttcgtcctcccctccattttatcctccaaaaac 48713752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 51020894 - 51020936
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||||||||||| ||||||| || |||||||    
T  51020894 tgttgcatttttcgtcctaccccccattttattcttcaaaaac 51020936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 23494542 - 23494579
Alignment:
Q  3 ttgcatttttcgtcctacccccaattttatcctccaaa 40  Q
    |||||||||||||||||||||| ||||||| |||||||    
T  23494542 ttgcatttttcgtcctaccccccattttattctccaaa 23494579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 48526293 - 48526333
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaa 42  Q
    |||||||||||||||||||||||| ||||||| |||||||||    
T  48526293 tgttgcatttttcgtcctaccccc-attttattctccaaaaa 48526333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 35779805 - 35779868
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaacactaatatggcaaagtaatac 64  Q
    |||||||||||| ||||||||||| |||||||||||||||||| || ||||||||||| |||||    
T  35779805 tgttgcattttttgtcctaccccccattttatcctccaaaaacgctgatatggcaaagaaatac 35779868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 8972334 - 8972397
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaacactaatatggcaaagtaatac 64  Q
    ||||||||||||||| |||||||| |||||||||||||||||| || |||||| |||| |||||    
T  8972334 tgttgcatttttcgttctaccccctattttatcctccaaaaacgctgatatggtaaagaaatac 8972397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 26538194 - 26538238
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaacac 45  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||    
T  26538194 tgttgcatttttcgtcctaccccccattttattctccaaaaacac 26538238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 239449 - 239491
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  239449 tgttgcatttttcgtcctaccccccattttattctccaaaaac 239491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 8425808 - 8425766
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||| ||||||||||||||| ||||||||||    
T  8425808 tgttgcatttttcgtcttacccccaattttattctccaaaaac 8425766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 11090618 - 11090660
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  11090618 tgttgcatttttcgtcctaccccccattttattctccaaaaac 11090660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 20444846 - 20444888
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    ||||||| |||||||||||||||| ||||||||||||||||||    
T  20444846 tgttgcagttttcgtcctaccccccattttatcctccaaaaac 20444888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 22374417 - 22374459
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  22374417 tgttgcatttttcgtcctaccccccattttattctccaaaaac 22374459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 35781111 - 35781069
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    ||||||||||||||||||| |||| ||||||||||||||||||    
T  35781111 tgttgcatttttcgtcctaacccccattttatcctccaaaaac 35781069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 40815793 - 40815751
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  40815793 tgttgcatttttcgtcctaccccccattttattctccaaaaac 40815751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 20440479 - 20440417
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaacactaatatggcaaagtaatac 64  Q
    ||||||| ||||||||||| |||| |||| ||||||||||||| || ||||||||||| |||||    
T  20440479 tgttgcagttttcgtcctatcccccattt-atcctccaaaaacgctgatatggcaaagaaatac 20440417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 14432239 - 14432281
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||| ||||||||||| ||||||| ||||||||||    
T  14432239 tgttgcatttttggtcctaccccccattttattctccaaaaac 14432281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 15551596 - 15551638
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    ||||||||||||||||| |||| | ||||||||||||||||||    
T  15551596 tgttgcatttttcgtccaaccctccattttatcctccaaaaac 15551638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 18451279 - 18451237
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    ||||||||||||| |||||||||| ||||||| ||||||||||    
T  18451279 tgttgcatttttcttcctaccccccattttattctccaaaaac 18451237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 43058430 - 43058472
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    ||||||||||||||| |||||||| ||||||| ||||||||||    
T  43058430 tgttgcatttttcgttctaccccccattttattctccaaaaac 43058472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 7736 - 7694
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  7736 tgttgcatttttcgtcctaccccctattttatcctccaaaaac 7694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 25612425 - 25612383
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  25612425 tgttgcatttttcgtcctaccccccattttatcctccaaaaac 25612383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 51474782 - 51474739
Alignment:
Q  1 tgttgcatttttcgtcctacccccaa-ttttatcctccaaaaac 43  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  51474782 tgttgcatttttcgtcctacccccaatttttatcctccaaaaac 51474739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 5137077 - 5137119
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  5137077 tgttgcatttttcgtcctaccccccattttattctccaaaaac 5137119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 22425261 - 22425219
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  22425261 tgttgcatttttcgtcctaccccccattttattctccaaaaac 22425219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 23228454 - 23228412
Alignment:
Q  3 ttgcatttttcgtcctacccccaattttatcctccaaaaacac 45  Q
    ||||||||||||||||||| || ||||||||||||||||||||    
T  23228454 ttgcatttttcgtcctacctcccattttatcctccaaaaacac 23228412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 23644559 - 23644601
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  23644559 tgttgcatttttcgtcctaccccccattttattctccaaaaac 23644601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 24301004 - 24300962
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  24301004 tgttgcatttttcgtcctaccccccattttattctccaaaaac 24300962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 25853675 - 25853633
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  25853675 tgttgcatttttcgtcctaccccccattttattctccaaaaac 25853633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 32697148 - 32697107
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  32697148 tgttgcatttttcgtcctaccccc-attttatcctccaaaaac 32697107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 37727026 - 37727068
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  37727026 tgttgcatttttcgtcctaccccccattttattctccaaaaac 37727068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 41046797 - 41046839
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  41046797 tgttgcatttttcgtcctaccccccattttattctccaaaaac 41046839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 43973538 - 43973580
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  43973538 tgttgcatttttcgtcctaccccccattttattctccaaaaac 43973580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 48453086 - 48453128
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  48453086 tgttgcatttttcgtcctaccccccattttattctccaaaaac 48453128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 39556024 - 39555983
Alignment:
Q  2 gttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    ||||||||||||||||||||||| ||||||| ||||||||||    
T  39556024 gttgcatttttcgtcctaccccccattttattctccaaaaac 39555983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 23227353 - 23227395
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||||| | ||| ||||||||||||||||||    
T  23227353 tgttgcatttttcgtccttctccccattttatcctccaaaaac 23227395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 27394025 - 27393983
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    ||||||||||| | |||||||||||||||||| ||||||||||    
T  27394025 tgttgcattttccatcctacccccaattttattctccaaaaac 27393983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 31779100 - 31779058
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    ||||||||||||||||| |||||| ||||||| ||||||||||    
T  31779100 tgttgcatttttcgtcccaccccccattttattctccaaaaac 31779058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 32535406 - 32535365
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  32535406 tgttgcatttttcgtcctaccccc-attttattctccaaaaac 32535365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 37220654 - 37220696
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    ||||||| |||||||||||||| | ||||||||||||||||||    
T  37220654 tgttgcacttttcgtcctaccctccattttatcctccaaaaac 37220696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 50116857 - 50116815
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    ||||||| |||||||||||||||| ||||| ||||||||||||    
T  50116857 tgttgcaattttcgtcctaccccccattttttcctccaaaaac 50116815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 25420589 - 25420548
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaa 42  Q
    |||||||||||||||| ||||||| |||||||||| ||||||    
T  25420589 tgttgcatttttcgtcataccccccattttatccttcaaaaa 25420548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 26837804 - 26837763
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaa 42  Q
    |||||||||||| ||||||||||| ||||||| |||||||||    
T  26837804 tgttgcattttttgtcctaccccccattttattctccaaaaa 26837763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 20840657 - 20840693
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctcc 37  Q
    |||||||||||||||||||||||| ||||||| ||||    
T  20840657 tgttgcatttttcgtcctaccccccattttattctcc 20840693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 15646643 - 15646601
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  15646643 tgttgcatttttcgtcctacccccaattttattctccaaaaac 15646601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 5540266 - 5540224
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  5540266 tgttgcatttttcgtcctaccccccattttattctccaaaaac 5540224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 5963026 - 5962984
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  5963026 tgttgcatttttcgtcctaccccccattttattctccaaaaac 5962984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 9019070 - 9019112
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  9019070 tgttgcatttttcgtcctaccccccattttattctccaaaaac 9019112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 15173193 - 15173235
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  15173193 tgttgcatttttcgtcctaccccccattttattctccaaaaac 15173235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 18984216 - 18984258
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  18984216 tgttgcatttttcgtcctaccccccattttattctccaaaaac 18984258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 29307050 - 29307092
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  29307050 tgttgcatttttcgtcctaccccccattttattctccaaaaac 29307092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 33144367 - 33144325
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  33144367 tgttgcatttttcgtcctaccccccattttattctccaaaaac 33144325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 50970726 - 50970684
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  50970726 tgttgcatttttcgtcctaccccccattttattctccaaaaac 50970684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 17433313 - 17433355
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    ||||||||||||| |||||||||| ||||||| ||||||||||    
T  17433313 tgttgcatttttcatcctaccccccattttattctccaaaaac 17433355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 29869717 - 29869759
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||||||| ||| ||||||| ||||||||||    
T  29869717 tgttgcatttttcgtcctacaccccattttattctccaaaaac 29869759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 39154116 - 39154158
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||||||||||| ||| ||| ||||||||||    
T  39154116 tgttgcatttttcgtcctaccccccattctattctccaaaaac 39154158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 52268387 - 52268429
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    ||||||| |||||||||||||||| ||||| ||||||||||||    
T  52268387 tgttgcacttttcgtcctaccccccattttttcctccaaaaac 52268429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 199
Target Start/End: Original strand, 941394 - 941435
Alignment:
Q  158 ctcaacctctgtatataacaatgtattgtctatgtcaactga 199  Q
    |||||||||| |||||||||||| |||||| |||||||||||    
T  941394 ctcaacctctatatataacaatgcattgtccatgtcaactga 941435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 4624673 - 4624628
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaacact 46  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||    
T  4624673 tgttgcatttttcgtcctaccccccattttatccttcaaaaacact 4624628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 5819377 - 5819335
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  5819377 tgttgcatttttcgtcctaccccccattttattctccaaaaac 5819335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 8647535 - 8647577
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  8647535 tgttgcatttttcgtcctaccccccattttattctccaaaaac 8647577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 19359233 - 19359275
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  19359233 tgttgcatttttcgtcctaccccccattttattctccaaaaac 19359275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 24362284 - 24362242
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  24362284 tgttgcatttttcgtcctaccccccattttattctccaaaaac 24362242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 29455190 - 29455148
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  29455190 tgttgcatttttcgtcctaccccccattttattctccaaaaac 29455148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 4219760 - 4219800
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaa 42  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  4219760 tgttgcatttttcgtcctaccccc-attttatcctccaaaaa 4219800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 2865203 - 2865161
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||| ||||||||||||||||||| ||||||| ||||||||||    
T  2865203 tgtttcatttttcgtcctaccccccattttattctccaaaaac 2865161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 13814175 - 13814134
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    ||||||| |||||||||||||||| ||||||||||||||||||    
T  13814175 tgttgcacttttcgtcctaccccc-attttatcctccaaaaac 13814134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 18183417 - 18183375
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||||||||||  ||||||| ||||||||||    
T  18183417 tgttgcatttttcgtcctacccctcattttattctccaaaaac 18183375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 24361934 - 24361976
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||||||||||| ||||||| ||||| ||||    
T  24361934 tgttgcatttttcgtcctaccccccattttattctccacaaac 24361976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 164639 - 164598
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaa 42  Q
    |||||||||||| ||||||||||| ||||||| |||||||||    
T  164639 tgttgcattttttgtcctaccccccattttattctccaaaaa 164598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 8461027 - 8461068
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaa 42  Q
    |||||||||||||||| ||||||| ||||||| |||||||||    
T  8461027 tgttgcatttttcgtcataccccccattttattctccaaaaa 8461068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 14463966 - 14463927
Alignment:
Q  3 ttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    ||||||||||||||||| |||||||||||| ||||||||||    
T  14463966 ttgcatttttcgtccta-ccccaattttattctccaaaaac 14463927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 25000189 - 25000229
Alignment:
Q  3 ttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||| ||||||||||| ||||||| ||||||||||    
T  25000189 ttgcattttttgtcctaccccccattttattctccaaaaac 25000229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0273 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0273
Description:

Target: scaffold0273; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 4655 - 4611
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaacac 45  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||    
T  4655 tgttgcatttttcgtcctaccccccattttattctccaaaaacac 4611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 28583538 - 28583577
Alignment:
Q  3 ttgcatttttcgtcctacccccaattttatcctccaaaaa 42  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  28583538 ttgcatttttcgtcctaccccccattttatcctccaaaaa 28583577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 19830517 - 19830559
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  19830517 tgttgcatttttcgtcctaccccccattttattctccaaaaac 19830559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 37786864 - 37786906
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  37786864 tgttgcatttttcgtcctaccccccattttattctccaaaaac 37786906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 38161048 - 38161090
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||||||| ||| ||||||||||||||||||    
T  38161048 tgttgcatttttcgtcctactccccattttatcctccaaaaac 38161090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 4641537 - 4641578
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaa 42  Q
    |||||||||||||||||||||||| ||||||| |||||||||    
T  4641537 tgttgcatttttcgtcctaccccccattttattctccaaaaa 4641578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 34534239 - 34534198
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaa 42  Q
    |||||||||||||||||||||||| ||||||| |||||||||    
T  34534239 tgttgcatttttcgtcctaccccccattttattctccaaaaa 34534198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 2659288 - 2659246
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    ||||||||||||| |||||||||| ||||||| ||||||||||    
T  2659288 tgttgcatttttcatcctaccccccattttattctccaaaaac 2659246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 19590622 - 19590664
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    ||||||||||||| |||||||||| ||||||| ||||||||||    
T  19590622 tgttgcatttttcatcctaccccccattttattctccaaaaac 19590664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 23953177 - 23953135
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||| ||||||| ||||||| ||||||||||    
T  23953177 tgttgcatttttcgtcataccccccattttattctccaaaaac 23953135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 28584370 - 28584328
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    ||||| |||||||||| ||||||| ||||||||||||||||||    
T  28584370 tgttgtatttttcgtcttaccccccattttatcctccaaaaac 28584328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 29100299 - 29100257
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||| ||||||||||| ||||||| ||||||||||    
T  29100299 tgttgcattttttgtcctaccccccattttattctccaaaaac 29100257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 32005062 - 32005020
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||||||| ||| ||||||| ||||||||||    
T  32005062 tgttgcatttttcgtcctactccccattttattctccaaaaac 32005020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 38858740 - 38858782
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||| ||||||||||| ||||||| ||||||||||    
T  38858740 tgttgcatttttggtcctaccccccattttattctccaaaaac 38858782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1223 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold1223
Description:

Target: scaffold1223; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 849 - 891
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  849 tgttgcatttttcgtcctaccccccattttattctccaaaaac 891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0951 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0951
Description:

Target: scaffold0951; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 1764 - 1806
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  1764 tgttgcatttttcgtcctaccccccattttattctccaaaaac 1806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 4890 - 4932
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  4890 tgttgcatttttcgtcctaccccccattttattctccaaaaac 4932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 57
Target Start/End: Complemental strand, 61900 - 61850
Alignment:
Q  7 atttttcgtcctacccccaattttatcctccaaaaacactaatatggcaaa 57  Q
    |||||||||||||||||| ||||| |||||||||||| || ||||||||||    
T  61900 atttttcgtcctaccccccattttgtcctccaaaaacgctgatatggcaaa 61850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 134121 - 134079
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  134121 tgttgcatttttcgtcctaccccccattttattctccaaaaac 134079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 19176738 - 19176696
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  19176738 tgttgcatttttcgtcctaccccccattttattctccaaaaac 19176696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 31133317 - 31133359
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  31133317 tgttgcatttttcgtcctaccccccattttattctccaaaaac 31133359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 33743367 - 33743325
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  33743367 tgttgcatttttcgtcctaccccccattttattctccaaaaac 33743325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 11656552 - 11656593
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaa 42  Q
    |||||||||||||||||||||||| ||||||| |||||||||    
T  11656552 tgttgcatttttcgtcctaccccccattttattctccaaaaa 11656593  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 9930105 - 9930065
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaa 41  Q
    |||||||||||||||||||||||| ||||||| ||||||||    
T  9930105 tgttgcatttttcgtcctaccccccattttattctccaaaa 9930065  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 44831693 - 44831649
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaacac 45  Q
    |||||||||||| ||||||||||| ||||||| ||||||||||||    
T  44831693 tgttgcatttttggtcctaccccccattttattctccaaaaacac 44831649  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 4630240 - 4630198
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    ||||||||||||| |||||||||| ||||||| ||||||||||    
T  4630240 tgttgcatttttcatcctaccccccattttattctccaaaaac 4630198  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 13224737 - 13224779
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    ||||| |||||||||||||||||| ||||||| ||||||||||    
T  13224737 tgttgaatttttcgtcctaccccccattttattctccaaaaac 13224779  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 33328255 - 33328297
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||||||||| | ||||||| ||||||||||    
T  33328255 tgttgcatttttcgtcctaccctcgattttattctccaaaaac 33328297  T

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Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 41681231 - 41681272
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  41681231 tgttgcatttttcgtcctaccccc-attttattctccaaaaac 41681272  T

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Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 43958282 - 43958324
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||||||||| | ||||||| ||||||||||    
T  43958282 tgttgcatttttcgtcctaccctctattttattctccaaaaac 43958324  T

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Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 10918223 - 10918264
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaa 42  Q
    ||||||||||||| || ||||||| |||||||||||||||||    
T  10918223 tgttgcatttttcatcataccccccattttatcctccaaaaa 10918264  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 10900378 - 10900336
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  10900378 tgttgcatttttcgtcctaccccccattttattctccaaaaac 10900336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 11277030 - 11276988
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  11277030 tgttgcatttttcgtcctaccccccattttattctccaaaaac 11276988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 15828089 - 15828047
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  15828089 tgttgcatttttcgtcctaccccccattttattctccaaaaac 15828047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 18296242 - 18296283
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  18296242 tgttgcatttttcgtcctaccccc-attttatcctccaaaaac 18296283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 20741197 - 20741239
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  20741197 tgttgcatttttcgtcctaccccccattttattctccaaaaac 20741239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 31470764 - 31470722
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  31470764 tgttgcatttttcgtcctaccccccattttattctccaaaaac 31470722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 1149880 - 1149839
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaa 42  Q
    |||||||||||||||||||||||| ||||||| |||||||||    
T  1149880 tgttgcatttttcgtcctaccccccattttattctccaaaaa 1149839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 5 - 40
Target Start/End: Complemental strand, 3835170 - 3835135
Alignment:
Q  5 gcatttttcgtcctacccccaattttatcctccaaa 40  Q
    |||||||||||||||||||| |||||||||||||||    
T  3835170 gcatttttcgtcctaccccccattttatcctccaaa 3835135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 2319769 - 2319811
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||||||||||| ||||||| ||||| ||||    
T  2319769 tgttgcatttttcgtcctaccccccattttattctccagaaac 2319811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 18257234 - 18257276
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||| ||||||| ||||||| ||||||||||    
T  18257234 tgttgcatttttcgtcataccccccattttattctccaaaaac 18257276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 18505367 - 18505329
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaa 39  Q
    |||||||||||||||||||||||| ||||||| ||||||    
T  18505367 tgttgcatttttcgtcctaccccccattttattctccaa 18505329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 28472734 - 28472775
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  28472734 tgttgcatttttcgtcctaccccc-attttattctccaaaaac 28472775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 29859923 - 29859964
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  29859923 tgttgcatttttcgtcctaccccc-attttattctccaaaaac 29859964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 23074090 - 23074127
Alignment:
Q  6 catttttcgtcctacccccaattttatcctccaaaaac 43  Q
    ||||||||||||||||||| ||||||| ||||||||||    
T  23074090 catttttcgtcctaccccccattttattctccaaaaac 23074127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 2322666 - 2322626
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaa 41  Q
    |||||||||||||||||||||||  ||||||| ||||||||    
T  2322666 tgttgcatttttcgtcctacccctcattttattctccaaaa 2322626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 11445084 - 11445128
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaacac 45  Q
    |||||||||||||||||||||| | ||||||| ||| ||||||||    
T  11445084 tgttgcatttttcgtcctaccctccattttattctctaaaaacac 11445128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 12935605 - 12935561
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaacac 45  Q
    |||| ||||||||||||||||||| ||||||| ||||| ||||||    
T  12935605 tgttacatttttcgtcctaccccccattttattctccataaacac 12935561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 16593 - 16635
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||| ||||||| ||||||| ||||||||||    
T  16593 tgttgcatttttcgtcataccccccattttattctccaaaaac 16635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 64399 - 64441
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaac 43  Q
    |||||||||||||||| ||||||| ||||||| ||||||||||    
T  64399 tgttgcatttttcgtcataccccccattttattctccaaaaac 64441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 10320 - 10280
Alignment:
Q  1 tgttgcatttttcgtcctacccccaattttatcctccaaaaa 42  Q
    |||||||||||||||||||||||| ||||||| |||||||||    
T  10320 tgttgcatttttcgtcctaccccc-attttattctccaaaaa 10280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 10719 - 10759
Alignment:
Q  2 gttgcatttttcgtcctacccccaattttatcctccaaaaa 42  Q
    ||||||||||||||||||||| | ||||||| |||||||||    
T  10719 gttgcatttttcgtcctaccctccattttattctccaaaaa 10759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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