View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1767_low_5 (Length: 410)
Name: NF1767_low_5
Description: NF1767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1767_low_5 |
 | |
|
| [»] scaffold0794 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 384; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Original strand, 11445135 - 11445534
Alignment:
| Q |
1 |
ttgatcaaatactgtgcatttgaggtcaggaaaagcttcatggatgagttttgtgaaacctcctcttccacctccaacatcgactatagactccaaacct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
11445135 |
ttgatcaaatactgtgcatttgaggtcaggaaaagcttcatggatgagttttgtgaaacctcctcttccacctccaacatcaactatagactccaaacct |
11445234 |
T |
|
| Q |
101 |
tcaaacacatgattgcactcttttagagcaaggttgaagatttgagaatcagcagccatagcctcttgaaacatactcagttcatcagattcagtatctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11445235 |
tcaaacacatgattgcactcttttagagcaaggttgaagatttgagaatcagcagccatagcctcttgaaacatactcagttcatcagattcagtatctt |
11445334 |
T |
|
| Q |
201 |
tgttaagatagtcccaaaatgtctctcctcttgcgctctcaaagaggctaagttccttgtcctcagtgagccatttcttagaggagtgccacatgttcag |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
11445335 |
tgttaagatagtcccaaaatgtctctcctcttgcgctctcaaataggctgagttccttgtcctcagtgagccatttcttagaggagtgccacacgttcag |
11445434 |
T |
|
| Q |
301 |
acgacatggatgaagcactccgctaacaaatggtgacaaacatgttgatttgccacttatgagaagcattgaaggaggagtgagagaatatgttgtttct |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11445435 |
acgacatggatgaagcactccgctaacaaatggtgacaaacatgttgatttgccacttatgagaagcattgaaggaggagtgagagaatatgttgtttct |
11445534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Complemental strand, 11547955 - 11547556
Alignment:
| Q |
1 |
ttgatcaaatactgtgcatttgaggtcaggaaaagcttcatggatgagttttgtgaaacctcctcttccacctccaacatcgactatagactccaaacct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
11547955 |
ttgatcaaatactgtgcatttgaggtcaggaaaagcttcatggatgagttttgtgaaacctcctcttccacctccaacatcaactatagactccaaacct |
11547856 |
T |
|
| Q |
101 |
tcaaacacatgattgcactcttttagagcaaggttgaagatttgagaatcagcagccatagcctcttgaaacatactcagttcatcagattcagtatctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11547855 |
tcaaacacatgattgcactcttttagagcaaggttgaagatttgagaatcagcagccatagcctcttgaaacatactcagttcatcagattcagtatctt |
11547756 |
T |
|
| Q |
201 |
tgttaagatagtcccaaaatgtctctcctcttgcgctctcaaagaggctaagttccttgtcctcagtgagccatttcttagaggagtgccacatgttcag |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
11547755 |
tgttaagatagtcccaaaatgtctctcctcttgcgctctcaaataggctgagttccttgtcctcagtgagccatttcttagaggagtgccacacgttcag |
11547656 |
T |
|
| Q |
301 |
acgacatggatgaagcactccgctaacaaatggtgacaaacatgttgatttgccacttatgagaagcattgaaggaggagtgagagaatatgttgtttct |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11547655 |
acgacatggatgaagcactccgctaacaaatggtgacaaacatgttgatttgccacttatgagaagcattgaaggaggagtgagagaatatgttgtttct |
11547556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Complemental strand, 11507724 - 11507325
Alignment:
| Q |
1 |
ttgatcaaatactgtgcatttgaggtcaggaaaagcttcatggatgagttttgtgaaacctcctcttccacctccaacatcgactatagactccaaacct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
11507724 |
ttgatcaaatactgtgcatttgaggtcaggaaaagcttcatggatgagttttgtgaaacctcctcttccacctccaacatcaactatagacttcaaacct |
11507625 |
T |
|
| Q |
101 |
tcaaacacatgattgcactcttttagagcaaggttgaagatttgagaatcagcagccatagcctcttgaaacatactcagttcatcagattcagtatctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11507624 |
tcaaacacatgattgcactcttttagagcaaggttgaagatttgagaatcagcagccatagcctcttgaaacatactcagttcatcagattcagtatctt |
11507525 |
T |
|
| Q |
201 |
tgttaagatagtcccaaaatgtctctcctcttgcgctctcaaagaggctaagttccttgtcctcagtgagccatttcttagaggagtgccacatgttcag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||| ||||||||| ||| |||||||| |
|
|
| T |
11507524 |
tgttaagatagtcccaaaatgtctctcctcttgcgctctcaaagagactgagttccttctcctcagtgagccatttcgtagaggagtaccatatgttcag |
11507425 |
T |
|
| Q |
301 |
acgacatggatgaagcactccgctaacaaatggtgacaaacatgttgatttgccacttatgagaagcattgaaggaggagtgagagaatatgttgtttct |
400 |
Q |
| |
|
|||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
11507424 |
acgacatggatgaaccgttccggtaacaaatggtgacaaacatgttgatttgccacttatgagaagcattgaaggaggagtgagagaatatattgtttct |
11507325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 1 - 400
Target Start/End: Original strand, 11468125 - 11468524
Alignment:
| Q |
1 |
ttgatcaaatactgtgcatttgaggtcaggaaaagcttcatggatgagttttgtgaaacctcctcttccacctccaacatcgactatagactccaaacct |
100 |
Q |
| |
|
|||||| || ||||||||||||| || ||||| ||||||| |||||||||| | | |||| | |||||| | ||||| || | ||| |||||||| |
|
|
| T |
11468125 |
ttgatctaaaactgtgcatttgatgtgtggaaattcttcatgaatgagttttgacacaactccagtcccacctgccacatcaaccaaagattccaaaccc |
11468224 |
T |
|
| Q |
101 |
tcaaacacatgattgcactcttttagagcaaggttgaagatttgagaatcagcagccatagcctcttgaaacatactcagttcatcagattcagtatctt |
200 |
Q |
| |
|
||||||||||| |||| || || |||||||| || || ||||| |||||||| ||||| ||| ||||||||| || |||| ||||||||||| ||||| |
|
|
| T |
11468225 |
tcaaacacatggctgcagtccttgagagcaagcttaaacatttgtgaatcagctgccatggccccttgaaacagaccaagtttatcagattcagaatctt |
11468324 |
T |
|
| Q |
201 |
tgttaagatagtcccaaaatgtctctcctcttgcgctctcaaagaggctaagttccttgtcctcagtgagccatttcttagaggagtgccacatgttcag |
300 |
Q |
| |
|
|||||||| ||| |||||||||| || |||| || ||| | || ||| ||||| ||||| | || |||||||||||||||||||||||| | ||| |
|
|
| T |
11468325 |
tgttaagaaagttaaaaaatgtctcccccattgcactttcataaagtgcaagatccttctcctctgagaaccatttcttagaggagtgccacatatccag |
11468424 |
T |
|
| Q |
301 |
acgacatggatgaagcactccgctaacaaatggtgacaaacatgttgatttgccacttatgagaagcattgaaggaggagtgagagaatatgttgtttct |
400 |
Q |
| |
|
| |||||||||||| | ||| |||||| ||||| ||||| ||||||| ||| | ||||||||| |||||||||| ||||||| ||| | ||||||| |
|
|
| T |
11468425 |
agaacatggatgaagaattcccttaacaagtggtgcaaaacaagttgattcaccattgatgagaagctttgaaggaggtgtgagagcataagctgtttct |
11468524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 1 - 400
Target Start/End: Complemental strand, 11523336 - 11522937
Alignment:
| Q |
1 |
ttgatcaaatactgtgcatttgaggtcaggaaaagcttcatggatgagttttgtgaaacctcctcttccacctccaacatcgactatagactccaaacct |
100 |
Q |
| |
|
|||||| || ||||||||||||| || ||||| ||||||| |||||||||| | | |||| | |||||| | ||||| || | ||| |||||||| |
|
|
| T |
11523336 |
ttgatctaaaactgtgcatttgatgtgtggaaattcttcatgaatgagttttgacacaactccagtcccacctgccacatcaaccaaagattccaaaccc |
11523237 |
T |
|
| Q |
101 |
tcaaacacatgattgcactcttttagagcaaggttgaagatttgagaatcagcagccatagcctcttgaaacatactcagttcatcagattcagtatctt |
200 |
Q |
| |
|
||||||||||| |||| || || |||||||| || || ||||| |||||||| ||||| ||| ||||||||| || |||| ||||||||||| ||||| |
|
|
| T |
11523236 |
tcaaacacatggctgcagtccttgagagcaagcttaaacatttgtgaatcagctgccatggccccttgaaacagaccaagtttatcagattcagaatctt |
11523137 |
T |
|
| Q |
201 |
tgttaagatagtcccaaaatgtctctcctcttgcgctctcaaagaggctaagttccttgtcctcagtgagccatttcttagaggagtgccacatgttcag |
300 |
Q |
| |
|
|||||||| ||| |||||||||| || |||| || ||| | || ||| ||||| ||||| | || |||||||||||||||||||||||| | ||| |
|
|
| T |
11523136 |
tgttaagaaagttaaaaaatgtctcccccattgcactttcataaagtgcaagatccttctcctctgagaaccatttcttagaggagtgccacatatccag |
11523037 |
T |
|
| Q |
301 |
acgacatggatgaagcactccgctaacaaatggtgacaaacatgttgatttgccacttatgagaagcattgaaggaggagtgagagaatatgttgtttct |
400 |
Q |
| |
|
| |||||||||||| | ||| |||||| ||||| ||||| ||||||| ||| | ||||||||| |||||||||| ||||||| ||| | ||||||| |
|
|
| T |
11523036 |
agaacatggatgaagaattcccttaacaagtggtgcaaaacaagttgattcaccattgatgagaagctttgaaggaggtgtgagagcataagctgtttct |
11522937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 392
Target Start/End: Complemental strand, 34776318 - 34775927
Alignment:
| Q |
1 |
ttgatcaaatactgtgcatttgaggtcaggaaaagcttcatggatgagttttgtgaaacctcctcttccacctccaacatcgactatagactccaaacct |
100 |
Q |
| |
|
||||||||| || || ||||| |||| ||||||| |||||| ||||||||||| | ||| || | |||||||||||||| || | |||||||||||| |
|
|
| T |
34776318 |
ttgatcaaaaacagtacatttaaggtgaggaaaaatttcatgaatgagttttgtaacaccaccagtaccacctccaacatcaacaagagactccaaaccc |
34776219 |
T |
|
| Q |
101 |
tcaaacacatgattgcactcttttagagcaaggttgaagatttgagaatcagcagccatagcctcttgaaacatactcagttcatcagattcagtatctt |
200 |
Q |
| |
|
|| || || | || ||||| ||| |||| || || ||| |||||||| |||||||| |||||||||||||||| | |||||||| ||||| |
|
|
| T |
34776218 |
tcgaaaacgcgtttattctcttggagaacaagcttaaacattctagaatcagatgccatagcatcttgaaacatactcaaagtactagattcagaatctt |
34776119 |
T |
|
| Q |
201 |
tgttaagatagtcccaaaatgtctctcctcttgcgctctcaaagaggctaagttccttgtcctcagtgagccatttcttagaggagtgccacatgttcag |
300 |
Q |
| |
|
|||||||| | |||||||| |||| ||| |||| | |||||| | | ||||||| || ||| ||| ||||||||| ||||| |||||||| | |
|
|
| T |
34776118 |
tgttaagaaaatcccaaaaactctcccctgttgcacactcaaacaatgtttgttccttatcttcattgaaccatttctttgaggaactccacatgtctaa |
34776019 |
T |
|
| Q |
301 |
acgacatggatgaagcactccgctaacaaatggtgacaaacatgttgatttgccacttatgagaagcattgaaggaggagtgagagaatatg |
392 |
Q |
| |
|
| || ||||||||| |||| |||||| || || |||||||||| ||| ||||||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
34776018 |
agaacttggatgaagtgctcctttaacaattgaagataaacatgttggttttccacttatgagaagctttgaaggaggtgtgagagaatatg |
34775927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 374
Target Start/End: Complemental strand, 34784530 - 34784157
Alignment:
| Q |
1 |
ttgatcaaatactgtgcatttgaggtcaggaaaagcttcatggatgagttttgtgaaacctcctcttccacctccaacatcgactatagactccaaacct |
100 |
Q |
| |
|
||||||||| || |||||||||| | |||||| |||||||| || || ||||||| | | || ||||||| | ||||| || | ||| |||||||| |
|
|
| T |
34784530 |
ttgatcaaaaacagtgcatttgatctgaggaaatgcttcatgaataagctttgtgacagcaccggttccacccgcgacatcaacaagagattccaaaccc |
34784431 |
T |
|
| Q |
101 |
tcaaacacatgattgcactcttttagagcaaggttgaagatttgagaatcagcagccatagcctcttgaaacatactcagttcatcagattcagtatctt |
200 |
Q |
| |
|
|||||||||| ||| ||| | |||||||| || || ||| |||||||||||||||||| |||||||||| ||||| | ||||||||| ||||| |
|
|
| T |
34784430 |
tcaaacacattcttgttctcatgaagagcaagcttaaacattctagaatcagcagccatagcatcttgaaacaaactcaaagtaccagattcagaatctt |
34784331 |
T |
|
| Q |
201 |
tgttaagatagtcccaaaatgtctctcctcttgcgctctcaaagaggctaagttccttgtcctcagtgagccatttcttagaggagtgccacatgttcag |
300 |
Q |
| |
|
|||||||| | |||||| | |||||||| |||| | |||||| || | ||||||| |||||| ||| ||||||||| || || | |||||||| | |
|
|
| T |
34784330 |
tgttaagaaaatcccaatagttctctcctgttgcacactcaaaaagagtttgttccttatcctcattgaaccatttctttgaagacttccacatgtctat |
34784231 |
T |
|
| Q |
301 |
acgacatggatgaagcactccgctaacaaatggtgacaaacatgttgatttgccacttatgagaagcattgaag |
374 |
Q |
| |
|
| || || ||||||| |||| || || | ||| |||||||| ||||| ||||||||||||||| |||||| |
|
|
| T |
34784230 |
agaacttgcatgaagcgctccttcaataagcgttgataaacatgtcgattttccacttatgagaagctttgaag |
34784157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0794 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: scaffold0794
Description:
Target: scaffold0794; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Complemental strand, 2381 - 1982
Alignment:
| Q |
1 |
ttgatcaaatactgtgcatttgaggtcaggaaaagcttcatggatgagttttgtgaaacctcctcttccacctccaacatcgactatagactccaaacct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
2381 |
ttgatcaaatactgtgcatttgaggtcaggaaaagcttcatggatgagttttgtgaaacctcctcttccacctccaacatcaactatagaccccaaacct |
2282 |
T |
|
| Q |
101 |
tcaaacacatgattgcactcttttagagcaaggttgaagatttgagaatcagcagccatagcctcttgaaacatactcagttcatcagattcagtatctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2281 |
tcaaacacatgattgcactcttttagagcaaggttgaagatttgagaatcagcagccatagcctcttgaaacatactcagttcatcagattcagtatctt |
2182 |
T |
|
| Q |
201 |
tgttaagatagtcccaaaatgtctctcctcttgcgctctcaaagaggctaagttccttgtcctcagtgagccatttcttagaggagtgccacatgttcag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||| ||||||||| ||| |||||||| |
|
|
| T |
2181 |
tgttaagatagtcccaaaatgtctctcctcttgcgctctcaaagagactgagttccttctcctcagtgagccatttcgtagaggagtaccatatgttcag |
2082 |
T |
|
| Q |
301 |
acgacatggatgaagcactccgctaacaaatggtgacaaacatgttgatttgccacttatgagaagcattgaaggaggagtgagagaatatgttgtttct |
400 |
Q |
| |
|
|||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2081 |
acgacatggatgaaccgttccggtaacaaatggtgacaaacatgttgatttgccacttatgagaagcattgaaggaggagtgagagaatatattgtttct |
1982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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