View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1767_low_7 (Length: 330)

Name: NF1767_low_7
Description: NF1767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1767_low_7
NF1767_low_7
[»] chr4 (4 HSPs)
chr4 (12-243)||(46695585-46695815)
chr4 (248-309)||(46695475-46695536)
chr4 (12-89)||(22487745-22487822)
chr4 (90-160)||(36363633-36363703)
[»] chr7 (1 HSPs)
chr7 (12-89)||(40954053-40954130)
[»] chr5 (1 HSPs)
chr5 (12-67)||(36230332-36230387)
[»] chr1 (1 HSPs)
chr1 (29-88)||(42379060-42379119)
[»] chr3 (2 HSPs)
chr3 (23-88)||(33511332-33511396)
chr3 (38-89)||(27818751-27818802)
[»] chr6 (1 HSPs)
chr6 (23-89)||(12588037-12588103)
[»] chr2 (1 HSPs)
chr2 (120-160)||(37744081-37744121)


Alignment Details
Target: chr4 (Bit Score: 153; Significance: 5e-81; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 12 - 243
Target Start/End: Complemental strand, 46695815 - 46695585
Alignment:
Q  12 attattctacataaaaataaaaatttaaaatattttgtgtaggcacaagcccacaccagagcacacatgcatccgtccttgctaacaagtgcccgaagtt 111  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46695815 attattctatataaaaataaaaatttaaaatattttgtgtaggcacaagcccacaccagagcacacatgcatccgtccttgctaacaagtgcccgaagtt 46695716  T
Q  112 aagaatttaaaaatagaaatgatcgataatttttatgtataaaaaattannnnnnngatgttttaatatgctgaatacacaaattctnnnnnnncatttc 211  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||         ||| |     
T  46695715 aagaatttaaaaatagaaataatcgataatttttatgtataaaaaatta-ttttttgatgttttaatatgctgaatacacaaatttaaaaaaaacatctt 46695617  T
Q  212 tactttaaacttcttaaaaacacttgttagca 243  Q
    ||||||||| ||||||| ||||||||||||||    
T  46695616 tactttaaaattcttaagaacacttgttagca 46695585  T

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Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 248 - 309
Target Start/End: Complemental strand, 46695536 - 46695475
Alignment:
Q  248 gagacaagtcttaagttatcttagatatcataaaccctaatagatgggaattaactagatcc 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  46695536 gagacaagtcttaagttatcttagatatcataaaccctaatagatgggaatgaactagatcc 46695475  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 89
Target Start/End: Original strand, 22487745 - 22487822
Alignment:
Q  12 attattctacataaaaataaaaatttaaaatattttgtgtaggcacaagcccacaccagagcacacatgcatccgtcc 89  Q
    ||||| |||| | ||||||||||| ||||||||||||||| ||||||||||||||||| | |||||||||||||||||    
T  22487745 attatactacttcaaaataaaaatgtaaaatattttgtgtgggcacaagcccacaccacaacacacatgcatccgtcc 22487822  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 160
Target Start/End: Complemental strand, 36363703 - 36363633
Alignment:
Q  90 ttgctaacaagtgcccgaagttaagaatttaaaaatagaaatgatcgataatttttatgtataaaaaatta 160  Q
    |||||||||||||||| |||||||| |||  ||||||||||| || | |||  |||||||| |||||||||    
T  36363703 ttgctaacaagtgccctaagttaaggattctaaaatagaaataattggtaagatttatgtagaaaaaatta 36363633  T

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Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 12 - 89
Target Start/End: Complemental strand, 40954130 - 40954053
Alignment:
Q  12 attattctacataaaaataaaaatttaaaatattttgtgtaggcacaagcccacaccagagcacacatgcatccgtcc 89  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||| | |||||||||||||||||    
T  40954130 attattctacttaaaaataaaaatttaaaatattttgtgtaggcacaatcccaccccacaacacacatgcatccgtcc 40954053  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 67
Target Start/End: Complemental strand, 36230387 - 36230332
Alignment:
Q  12 attattctacataaaaataaaaatttaaaatattttgtgtaggcacaagcccacac 67  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  36230387 attatactacttaaaaataaaaatttaaaatattttgtgtaggcacaagcccacac 36230332  T

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Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 42379060 - 42379119
Alignment:
Q  29 taaaaatttaaaatattttgtgtaggcacaagcccacaccagagcacacatgcatccgtc 88  Q
    ||||||||||||||||||||| ||||||||||||| ||||| | ||||||||||||||||    
T  42379060 taaaaatttaaaatattttgtataggcacaagcccgcaccacaacacacatgcatccgtc 42379119  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 33511396 - 33511332
Alignment:
Q  23 taaaaataaaaatttaaaatattttgtgtaggcacaagcccacaccagagcacacatgcatccgtc 88  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||| |  |||||||||||||||    
T  33511396 taaaaataaaaatt-aaaatattttgtgtagggacaagcccacaccacacaacacatgcatccgtc 33511332  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 89
Target Start/End: Original strand, 27818751 - 27818802
Alignment:
Q  38 aaaatattttgtgtaggcacaagcccacaccagagcacacatgcatccgtcc 89  Q
    ||||||||||||||||||||||||||||||   |  ||||||||||||||||    
T  27818751 aaaatattttgtgtaggcacaagcccacacatcaagacacatgcatccgtcc 27818802  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 89
Target Start/End: Original strand, 12588037 - 12588103
Alignment:
Q  23 taaaaataaaaatttaaaatattttgtgtaggcacaagcccacaccagagcacacatgcatccgtcc 89  Q
    |||||||||||||||||||||||||||| |  | |||||||||||   | ||||||||||| |||||    
T  12588037 taaaaataaaaatttaaaatattttgtgcattcgcaagcccacacatcaacacacatgcattcgtcc 12588103  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 160
Target Start/End: Complemental strand, 37744121 - 37744081
Alignment:
Q  120 aaaaatagaaatgatcgataatttttatgtataaaaaatta 160  Q
    ||||||||||||||| ||||||||||||||| | |||||||    
T  37744121 aaaaatagaaatgattgataatttttatgtaaacaaaatta 37744081  T

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