View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1767_low_8 (Length: 323)
Name: NF1767_low_8
Description: NF1767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1767_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 21 - 307
Target Start/End: Complemental strand, 27985730 - 27985446
Alignment:
| Q |
21 |
tcttctcaaattcacctaccatttccaacccagagacaagattttacatatcttggtcctattttgacgagcgagcatgcacaggtacatccatatgcac |
120 |
Q |
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| T |
27985730 |
tcttctcaaattcacctaccatttccaacccagagacaagattttacatatc--ggtcctattttgacaagggagcatgcacaggtacatccaaatgcac |
27985633 |
T |
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| Q |
121 |
attcgcatgtacatgcgaaaccaagacaaagtgatgtgtatgccttggaaaggttctcacattttcaagagaatatgtaaccaattttaaccaacgtttc |
220 |
Q |
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| T |
27985632 |
attcgcatgtacatgcgaaaccaagacaaagtgatgtgtatgccttggaaaggttctcacattttcaagagaatatgtaaccaattttaaccaacgtttc |
27985533 |
T |
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| Q |
221 |
acttccacctcagatttcttgcctctaaagcttccaaacaac-atatcaggtttgaaaaatgtaacttcagatgtcaggaagattttt |
307 |
Q |
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| T |
27985532 |
acttccacctcagatttcttgcctctaaaacttccaaacaacaatatcaggtttg-aaaatgtaactttagatgtcaggaagattttt |
27985446 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 103
Target Start/End: Original strand, 10506756 - 10506826
Alignment:
| Q |
33 |
cacctaccatttccaacccagagacaagattttacatatcttggtcctattttgacgagcgagcatgcaca |
103 |
Q |
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|||| |||||||||||| || | || |||||||||||||||||||||| ||||| ||| || |||||||| |
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| T |
10506756 |
cacccaccatttccaacacataaacctgattttacatatcttggtcctactttgaggagggaacatgcaca |
10506826 |
T |
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