View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17680_high_1 (Length: 593)
Name: NF17680_high_1
Description: NF17680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17680_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-147; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 67 - 402
Target Start/End: Original strand, 13578131 - 13578466
Alignment:
| Q |
67 |
tgaaaggttgataaacaagaataaattctaattacaactaatgttttcatggaaggtctatactatgagctaaagagataaacattatgcatcaatgtac |
166 |
Q |
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| T |
13578131 |
tgaaaggttgataaacaagaataaattctaattacaactaatgttttcatggaaggtctatactatgagctaaagagataaacattatgcatcaatgtac |
13578230 |
T |
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| Q |
167 |
tttagagtcatttattaattattcgaattttagttaaacatatttttaaacaccatagttattcaaaattatttaattgaggcaaacattgtannnnnnn |
266 |
Q |
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| T |
13578231 |
tttagagtcatttattaattattcgaattttagttaaacatatttttaaacaccgtagttattcaaaattatttaattgaggcaaacattgtattttttt |
13578330 |
T |
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| Q |
267 |
nnnactatataaagtgtcaaaagaagtttatatttgttaggtgnnnnnnntgactggaattcataagttttttcatttggtgattcattttgtattccta |
366 |
Q |
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| T |
13578331 |
tttactatataaagtgtgaaaagaagtttatatttgttaggtgaaaaaaatgactggaattcataagttttttcatatggtgattcattttgtattccta |
13578430 |
T |
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| Q |
367 |
tttcttgtagtgtatggttcgggtaaggtcattctc |
402 |
Q |
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| T |
13578431 |
tttcttgttgtgtatggttcgggtaagctcattctc |
13578466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 67 - 259
Target Start/End: Original strand, 13569627 - 13569819
Alignment:
| Q |
67 |
tgaaaggttgataaacaagaataaattctaattacaactaatgttttcatggaaggtctatactatgagctaaagagataaacattatgcatcaatgtac |
166 |
Q |
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| T |
13569627 |
tgaaaggttgataagcaagaataaattataattacaattaatgttttcatcgaaggtctattctatgagctaaagagataaacattatgcatcaatgtaa |
13569726 |
T |
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| Q |
167 |
tttagagtcatttattaattattcgaattttagttaaacatatttttaaacaccatagttattcaaaattatttaattgaggcaaacattgta |
259 |
Q |
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| T |
13569727 |
tttagagtcatttattaattattctaattttaatcaaacatatttttaaacaccataattattcaaaattatttgattgaggcaaacattgta |
13569819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 471 - 584
Target Start/End: Original strand, 13578537 - 13578650
Alignment:
| Q |
471 |
aggtatcacagagaaagagtgtattactgacgatgattgcaatcgaaaatatccgatgcatgctaatagaggactgcagtgtcttaatggtgaatgtaag |
570 |
Q |
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| T |
13578537 |
aggtatcgcagagaaagagtgtattactgacgatgattgcaatcgaaaatatccgatgcatgctaatagaggactgcagtgtcttaatggtgaatgtaag |
13578636 |
T |
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| Q |
571 |
agctcgagaataat |
584 |
Q |
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| T |
13578637 |
agctcgagaataat |
13578650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 69 - 255
Target Start/End: Original strand, 13583876 - 13584061
Alignment:
| Q |
69 |
aaaggttgataaacaagaataaattctaattacaa-ctaatgttttcatggaaggtctatactatgagctaaagagataaacattatgcatcaatgtact |
167 |
Q |
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|||||||| |||| |||||||| ||||||||||| ||| |||| ||| ||||||||| || ||||||||| |||||||||| ||||| |||||||| |
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| T |
13583876 |
aaaggttggtaaataagaataatctctaattacaagcta---ttttaatgtaaggtctattatacgagctaaagggataaacattgtgcataaatgtact |
13583972 |
T |
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| Q |
168 |
ttagagtcatttattaattattcgaattttagt-taaacatatttttaaacaccatagttattcaaaattatttaattgaggcaaacat |
255 |
Q |
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| T |
13583973 |
ttagagtcatttaatgactattctaattttaatcccatcatttatttaaacaacataattattaaaagttatttgattgaggtaaacat |
13584061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 49
Target Start/End: Original strand, 13578083 - 13578113
Alignment:
| Q |
19 |
ggttttccactctctagtatgaaaggatagg |
49 |
Q |
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| T |
13578083 |
ggttttccactctctagtatgaaaggatagg |
13578113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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