View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17680_high_14 (Length: 234)
Name: NF17680_high_14
Description: NF17680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17680_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 15 - 228
Target Start/End: Complemental strand, 51695372 - 51695158
Alignment:
| Q |
15 |
cacagagtacag-acactacgtattattcttaaatatgtttacatataagtagttatctctaaaatatctttgaattcattaagacataaaattaatctc |
113 |
Q |
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| T |
51695372 |
cacagagtacaggacactacgtattattcttaaatatgtttacatataagtagttatctctaaaatatcttcgaattcattaagacataaaattaatctc |
51695273 |
T |
|
| Q |
114 |
agtaacatgtacaatgcaattgttaataccataccgcgaaatgaattggcatcttccaatccaacctcaagattaaccttaaaaacannnnnnnattgaa |
213 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
51695272 |
agtaacatgtacaatgcagttgttaataccataccgcgaaatgaattggcatcttccaatccaacctcaagattaaccttaaaaacaatttttgattgaa |
51695173 |
T |
|
| Q |
214 |
aatcccaaaaacaaa |
228 |
Q |
| |
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||||||||||||||| |
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| T |
51695172 |
aatcccaaaaacaaa |
51695158 |
T |
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