View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17680_high_2 (Length: 523)
Name: NF17680_high_2
Description: NF17680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17680_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 241 - 398
Target Start/End: Complemental strand, 29864210 - 29864056
Alignment:
| Q |
241 |
agtatacgaaagttaacatctccacaaatgatgcttctctcccatattcttcaagtctcaatggaataatgtgggcgtagaacttcatcaactcgtggtt |
340 |
Q |
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| T |
29864210 |
agtatgcgaaagttaacatctccacaaatgataattctctcccatattcttcaagtctcaatgggatactgtggccgtaggac---atcaactcgtggtt |
29864114 |
T |
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| Q |
341 |
aactacttccttattcataagatgcaaacgatagtcgtgttacttttatttctaaatg |
398 |
Q |
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| T |
29864113 |
aactacttccttaatcataagatgcaaacgatagtcgtattactcttatttctaaatg |
29864056 |
T |
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Target: chr2; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 175 - 359
Target Start/End: Complemental strand, 29849633 - 29849447
Alignment:
| Q |
175 |
ctcttcaatcttttcctaatttccgtaatagtcatta--ctaatgaggaaacaaaacaagctctttttagtatacgaaagttaacatctccacaaatgat |
272 |
Q |
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| T |
29849633 |
ctcttaaatcttttcctaatttccgtaatagtgattatactatggaggaa-caaaacaagctctttttagtatgcaaaagttaacatcttcagaagtgat |
29849535 |
T |
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| Q |
273 |
g-cttctctcccatattcttcaagtctcaatggaataatgtgggcgtagaacttcatcaactcgtggttaactacttccttattcata |
359 |
Q |
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| T |
29849534 |
ggcttctttcccatattcttcaaatctcaatgggatactgtgggcgtagaacttcatcaacttctggtaaactacttccttaatcata |
29849447 |
T |
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