View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17680_high_8 (Length: 295)
Name: NF17680_high_8
Description: NF17680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17680_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 139; Significance: 9e-73; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 4 - 158
Target Start/End: Original strand, 1205873 - 1206027
Alignment:
| Q |
4 |
gtaggagcagagatgtagtggtgaatataattgtacatatatgtttacatatttatagacgcgggaggtatattctaaatactacattctagaatgttca |
103 |
Q |
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| T |
1205873 |
gtaggaggagagatgtagtggtgaatataattgtacatatatgtttacatatttatagacgggggaggtatattctaaatactacattctagaatgttca |
1205972 |
T |
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| Q |
104 |
tgacatttctttgtacaaatgcagtattagtttattctactagagtcatgtgaac |
158 |
Q |
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| T |
1205973 |
tgacatttccttgtagaaatgcagtattagtttattctactagagtcatgtgaac |
1206027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 174 - 294
Target Start/End: Original strand, 1206065 - 1206185
Alignment:
| Q |
174 |
aataattagtttttcatccccatgctctttcccatcatgaatttaacataacctctattttcttctaatcaaggcagtgatcattgtttcccatggacag |
273 |
Q |
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| T |
1206065 |
aataattagtttttcatccccatgctctttcccatcatgaatttaacataacctctattttcttctaatcaaggcagtgatcattgtttcccatggagag |
1206164 |
T |
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| Q |
274 |
tgcatgaacccataaccccta |
294 |
Q |
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| T |
1206165 |
tgcatgaacccataaccccta |
1206185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 146
Target Start/End: Original strand, 37486301 - 37486379
Alignment:
| Q |
68 |
gaggtatattctaaatactacattctagaatgttcatgacatttctttgtacaaatgcagtattagtttattctactag |
146 |
Q |
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| T |
37486301 |
gaggtatattctagatactacattctagaatgttcatgacatttccttacgaaaatgtcgtattaatttattctactag |
37486379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 2248738 - 2248693
Alignment:
| Q |
53 |
tatttatagacgcgggaggtatattctaaatactacattctagaat |
98 |
Q |
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| T |
2248738 |
tatttatagatgtgggaggtatattctagatactacattctagaat |
2248693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 145
Target Start/End: Original strand, 10455929 - 10455991
Alignment:
| Q |
83 |
tactacattctagaatgttcatgacatttctttgtacaaatgcagtattagtttattctacta |
145 |
Q |
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| T |
10455929 |
tactaaattctagaatgttcatgatattttcttatataaatgtagtattagtttattctacta |
10455991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 104
Target Start/End: Original strand, 8942751 - 8942783
Alignment:
| Q |
72 |
tatattctaaatactacattctagaatgttcat |
104 |
Q |
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| T |
8942751 |
tatattctaaatactacattctaaaatgttcat |
8942783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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