View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17680_low_16 (Length: 216)
Name: NF17680_low_16
Description: NF17680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17680_low_16 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 26246671 - 26246884
Alignment:
| Q |
1 |
tttccttgaattttgattagacatattctcattgtattttgaatatagagatacaacaaagttcacaatatgagnnnnnnnnnnnnnnaagtaacttcac |
100 |
Q |
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| T |
26246671 |
tttccttgaattttgattagacatattctcattgtattttgaatatagagatgcaacaaagttcacaatatgagtttttattttttt-aagtaacttcac |
26246769 |
T |
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| Q |
101 |
aatatgagttagaacacgattttttatacatacacatttgttctcttttaaaaataaggtgtcaaatttaaataaaaaacaattataatgaaattttgag |
200 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
26246770 |
aatatgagttagaacacgattttttatatatacacatttgttctcttttaaaaataaggtgtcaaatttaaataaaaaa-aattataatgaaattttgag |
26246868 |
T |
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| Q |
201 |
attagaggagggtgtc |
216 |
Q |
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||||||||| |||||| |
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| T |
26246869 |
attagaggatggtgtc |
26246884 |
T |
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