View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17680_low_19 (Length: 204)
Name: NF17680_low_19
Description: NF17680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17680_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 26247289 - 26247111
Alignment:
| Q |
1 |
tctatgttcttcctaacaagtcagtgagtcatcaatcttctagcactaatgaatcatcacttaatagcaacatagtcactccacttttaatgataattca |
100 |
Q |
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| T |
26247289 |
tctatgttcttcctaacaagctagtgagtcatcaatcttctagcactaatgaatcaccacttaatagcaacatagtcactccacttttaatgataattta |
26247190 |
T |
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| Q |
101 |
tgtggacctccctacctaactcattggacccgatctttaaccctaattcattggagcccatatccttgttcatctcactcgac |
183 |
Q |
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| T |
26247189 |
tgtggttctc----cctaactcattggactcgatctttgaccctaattcattgcagcccatatccttgttcatatcactcgac |
26247111 |
T |
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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 86
Target Start/End: Original strand, 16389347 - 16389424
Alignment:
| Q |
9 |
cttcctaacaagtcagtgagtcatcaatcttctagcactaatgaatcatcacttaatagcaacatagtcactccactt |
86 |
Q |
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| T |
16389347 |
cttcctaacaaactagtgagtcaccaatcttctagaactaatgagtcactactaaatggcaacatagtcattccactt |
16389424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 86
Target Start/End: Original strand, 30911743 - 30911820
Alignment:
| Q |
9 |
cttcctaacaagtcagtgagtcatcaatcttctagcactaatgaatcatcacttaatagcaacatagtcactccactt |
86 |
Q |
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| T |
30911743 |
cttcctaacaaactagtgagtcaccaatcttctagaactaatgagtcactactaaatggcaacatagtcattccactt |
30911820 |
T |
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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 94
Target Start/End: Complemental strand, 8715927 - 8715859
Alignment:
| Q |
26 |
gagtcatcaatcttctagcactaatgaatcatcacttaatagcaacatagtcactccacttttaatgat |
94 |
Q |
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| T |
8715927 |
gagtcaccaatcttctagaattaattagtcgccacttaatagcaatataatcactccacttttaatgat |
8715859 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 32519741 - 32519806
Alignment:
| Q |
23 |
agtgagtcatcaatcttctagcactaatgaatcatcacttaatagcaacatagtcactccactttt |
88 |
Q |
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||||||||| ||||||||||| || ||||| |||| ||| ||| |||||||||||| || |||||| |
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| T |
32519741 |
agtgagtcaccaatcttctagaaccaatgagtcattactaaatggcaacatagtcattcaactttt |
32519806 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 86
Target Start/End: Original strand, 10129762 - 10129839
Alignment:
| Q |
9 |
cttcctaacaagtcagtgagtcatcaatcttctagcactaatgaatcatcacttaatagcaacatagtcactccactt |
86 |
Q |
| |
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||||||||||| ||||||||| ||||||||||| |||||||| ||| ||| ||| | |||||||||| ||||||| |
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| T |
10129762 |
cttcctaacaaactagtgagtcaccaatcttctagaactaatgagtcactactaaatggtaacatagtcattccactt |
10129839 |
T |
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