View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17680_low_4 (Length: 417)
Name: NF17680_low_4
Description: NF17680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17680_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 28240134 - 28240461
Alignment:
| Q |
1 |
cttaattaggtgttcatgcattgaaatctggcgaggaacaaaaattacacttgacctatgtagcaccgacacttcaagttgaaggcgtgtccaatgcctg |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28240134 |
cttaattgggtgttcatgcattgaaatctggcgaggaacaaaaattatacttgatctatgtagcaccgacacttcaagttgaaggcgtgtccaatgcctg |
28240233 |
T |
|
| Q |
101 |
acactgacatgtaattacatctaattactgctattttcacaatttataattggtgtttacgtgacagtgtcaatgcttcatagcatttgaccacaaagat |
200 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
28240234 |
acactcacaagtaattacatctaattactgctattttcacaatttataattggtgtttacgtgccagtgtcaatgcttcatagcatttgaccacaaagat |
28240333 |
T |
|
| Q |
201 |
tacctttaaatagggactttgtagttactttcccatcagaagttctagtcgtgacgcaaacttaatattttcatgcgaaaattcaatgttggatagcaaa |
300 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
28240334 |
tgcctttaaatagggactttgtagttactttcccatcagaagttctagtcgtgaagcaaacttaatattttcatgcaaaaattcagtgttggatagcaaa |
28240433 |
T |
|
| Q |
301 |
ctcacaatcacgggtatgaccttttgtgc |
329 |
Q |
| |
|
||||||||||| ||||||||||||||||| |
|
|
| T |
28240434 |
ctcacaatcac-ggtatgaccttttgtgc |
28240461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 338 - 396
Target Start/End: Original strand, 28240653 - 28240712
Alignment:
| Q |
338 |
tagaagggatgt-gcgaaaccagttatctagaaatttgttcttggtgctgtccttgatcg |
396 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28240653 |
tagaagggatgttgcgaaaccagttatctagaaatttgttcttggtgctgtccttgatcg |
28240712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 21158182 - 21158113
Alignment:
| Q |
16 |
atgcattgaaatctggcgaggaacaaaaatt-acacttgacctatgtagcaccgacacttcaagttgaag |
84 |
Q |
| |
|
|||||||||||||||| |||||||| ||||| ||| |||||||||||| |||| ||||||||| |||||| |
|
|
| T |
21158182 |
atgcattgaaatctggtgaggaacacaaatttacatttgacctatgtaacaccaacacttcaaattgaag |
21158113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 28232548 - 28232602
Alignment:
| Q |
13 |
ttcatgcattgaaatctggcgaggaacaaaaattacacttgacctatgtagcacc |
67 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||| | |||||||| |||||||| |
|
|
| T |
28232548 |
ttcatgcattaaaatctggcaaggaacaaaaattatatttgacctacgtagcacc |
28232602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 174 - 281
Target Start/End: Original strand, 4745597 - 4745705
Alignment:
| Q |
174 |
tgcttcatagcatttgaccacaaagattacctttaaatagggactttgtagttactttcccatcagaagtt-ctagtcgtgacgcaaacttaatattttc |
272 |
Q |
| |
|
||||||| | ||||||||||| |||| | |||| |||||||||||| ||||| |||||||||| ||||| ||||| || ||||| |||||||||| |
|
|
| T |
4745597 |
tgcttcaaaacatttgaccaccaagaatgccttgaaatagggacttcgtagtcggtttcccatcacaagttactagttcggaagcaaatttaatattttg |
4745696 |
T |
|
| Q |
273 |
atgcgaaaa |
281 |
Q |
| |
|
|||| |||| |
|
|
| T |
4745697 |
atgcaaaaa |
4745705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 276
Target Start/End: Original strand, 28232753 - 28232861
Alignment:
| Q |
170 |
tcaatgcttcatagcatttgaccacaaagattacctttaaatagggac-tttgtagttactttcccatcagaagtt-ctagtcgtgacgcaaacttaata |
267 |
Q |
| |
|
|||||||||||||| |||||||| | |||| |||| |||||||||| |||||| | ||||||||| ||||| ||||| | || |||||||||||| |
|
|
| T |
28232753 |
tcaatgcttcatagtgtttgaccaacatgatttccttgaaatagggacttttgtaatctgtttcccatcttaagttactagtagggaagcaaacttaata |
28232852 |
T |
|
| Q |
268 |
ttttcatgc |
276 |
Q |
| |
|
||||||||| |
|
|
| T |
28232853 |
ttttcatgc |
28232861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 1637954 - 1638033
Alignment:
| Q |
16 |
atgcattgaaatctggcgaggaacaaaaattacacttgacctatgtagcaccgacacttcaagttgaaggcgtgtccaatg |
96 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||| ||||||||| | ||||||||||| || |||||| ||| ||||||| |
|
|
| T |
1637954 |
atgcattgaaatctgg-gaggaacacaaattacatttgacctataaaacaccgacactttaaattgaagacgtatccaatg |
1638033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 94
Target Start/End: Original strand, 43163938 - 43163975
Alignment:
| Q |
57 |
tatgtagcaccgacacttcaagttgaaggcgtgtccaa |
94 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |
|
|
| T |
43163938 |
tatgtagcaccgacacttcaagttgaagttgtgtccaa |
43163975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University