View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17680_low_5 (Length: 385)
Name: NF17680_low_5
Description: NF17680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17680_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 11 - 290
Target Start/End: Complemental strand, 4379210 - 4378931
Alignment:
| Q |
11 |
taatactaaatggatggaaattataattaagaagtaggagnnnnnnnnnnnnnnnnngtgcaaaacgtgcacacgtaaatgtacttttgacaacaataat |
110 |
Q |
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| T |
4379210 |
taatactaaatggatggaaattataattaagaagtaggagaaaaaaccctaaaaaaagtgcaaaacgtgcacacgtaaatgtacttttgacaacaataat |
4379111 |
T |
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| Q |
111 |
aatgaaggaaaactagctataaatccgtactaaacatatccataaagatgaaggcattgctttgctgatacccattctacctttacctgttattgtctgt |
210 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
4379110 |
aatgaagaaaaactagctataaatccgtactaaacatatccataaagatgaaggcattgctttgctgatacccattctacctttacctgttactgtctgt |
4379011 |
T |
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| Q |
211 |
atgatgccattaatttattacttttacttctgtacacaagacagggccttgatcctctgctataaagtccaccatgcacg |
290 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4379010 |
atgatgccattaatttattacttttacttctgtacagaagacagggccttgatcctctgctataaagtccaccatgcacg |
4378931 |
T |
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