View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17680_low_7 (Length: 298)
Name: NF17680_low_7
Description: NF17680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17680_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 15 - 280
Target Start/End: Complemental strand, 31216214 - 31215949
Alignment:
| Q |
15 |
aatattcaccctcttttcccaatcaaatgcaatggcttgtgtgtcattgtttaacatttgagtcaaagttccaccttccaagaacttataaaccaaaaat |
114 |
Q |
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| T |
31216214 |
aatattcaccctcttttcccaatcaaatgcaatggcttgtgtgtcattgtttaacatttgagtcaaagttccaccttccaagaacttataaaccaaaaat |
31216115 |
T |
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| Q |
115 |
gagaatcttgaatgtcggcaatatccatagagctttatgatgttacgatgcctgatttctgtcaaagcttgaatttcattttcaaaggctttgatattgg |
214 |
Q |
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| T |
31216114 |
gagaatcttgaatgtcggcaatatccatagagctttatgatgttacgatgcctgatttctgtcaaagcttgaatttcattttcaaaggctttgatattgg |
31216015 |
T |
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| Q |
215 |
acctttccccatctattctcgaatgaagtttcttcactgcaacaaccatatctgcagacaacttag |
280 |
Q |
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| T |
31216014 |
acctttccccatctattctcgaatgaagtttcttcactgcaacaaccatatctgcagacaacttag |
31215949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 158
Target Start/End: Complemental strand, 31058977 - 31058837
Alignment:
| Q |
18 |
attcaccctcttttcccaatcaaatgcaatggcttgtgtgtcattgtttaacatttgagtcaaag-ttccaccttccaagaacttataaaccaaaaatga |
116 |
Q |
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| T |
31058977 |
attcaccctcttttcccaatcaaatgcaacggcttgtgtgtcattgtttagtatttga-tctaagcttccaccttccaagaacttgtaaaccaaaaacga |
31058879 |
T |
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| Q |
117 |
gaatcttgaatgtcggcaatatccatagagctttatgatgtt |
158 |
Q |
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| T |
31058878 |
gaatttagaatgtgagcaaaatccatgaagttttatgatgtt |
31058837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 18 - 158
Target Start/End: Complemental strand, 31140780 - 31140640
Alignment:
| Q |
18 |
attcaccctcttttcccaatcaaatgcaatggcttgtgtgtcattgtttaacatttgagtcaaagttccaccttccaagaacttataaaccaaaaatgag |
117 |
Q |
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| T |
31140780 |
attcaccctcttttcccaatcaaatgcagtggcttgtgtatcactgtttagcatttgacctaagcttcctccttccaagaacttgtaaaccaaaaatgag |
31140681 |
T |
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| Q |
118 |
aatcttgaatgtcggcaatatccatagagctttatgatgtt |
158 |
Q |
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| T |
31140680 |
aatttagaatgtgagcaaaatccatgaagctttatgatgtt |
31140640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 18 - 140
Target Start/End: Complemental strand, 31184501 - 31184379
Alignment:
| Q |
18 |
attcaccctcttttcccaatcaaatgcaatggcttgtgtgtcattgtttaacatttgagtcaaag-ttccaccttccaagaacttataaaccaaaaatga |
116 |
Q |
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| T |
31184501 |
attcaccctcttttcccaatcaaatgcaatggcttgtttttcattgtttattatttga-tctaagcttccaccttccatgaacttgtaaaccaaaaatga |
31184403 |
T |
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| Q |
117 |
gaatcttgaatgtcggcaatatcc |
140 |
Q |
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| T |
31184402 |
gaacttagaatgttggcaatatcc |
31184379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 18 - 155
Target Start/End: Complemental strand, 31103421 - 31103284
Alignment:
| Q |
18 |
attcaccctcttttcccaatcaaatgcaatggcttgtgtgtcattgtttaacatttgagtcaaag-ttccaccttccaagaacttataaaccaaaaatga |
116 |
Q |
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| T |
31103421 |
attcaccctcttttcccaatcaaatgcaatggcttgtttttcattgtttagtatttga-tctaagcttccaccttccatgaacttgtaaactaaaaatga |
31103323 |
T |
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| Q |
117 |
gaatcttgaatgtcggcaatatccatagagctttatgat |
155 |
Q |
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| T |
31103322 |
gaacttagaatgtgagcaaaatccatgaagctttatgat |
31103284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 31159612 - 31159555
Alignment:
| Q |
18 |
attcaccctcttttcccaatcaaatgcaatggcttgtgtgtcattgtttaacatttga |
75 |
Q |
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| T |
31159612 |
attcaccctcttttcccaatcaaatgcagtggcttgtgtatcactgtttagcatttga |
31159555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 31241715 - 31241666
Alignment:
| Q |
18 |
attcaccctcttttcccaatcaaatgcaatggcttgtgtgtcattgttta |
67 |
Q |
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| T |
31241715 |
attcaccctcttttcccaatcaaatgcagtggcttgtgtatcactgttta |
31241666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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